Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC131280.1-202ENST00000624067 4211 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.32□□□□□ -2.36
USF3Q68DE3 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.32□□□□□ -2.36
USF3Q68DE3 SNORA25-201ENST00000384384 134 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 MIR218-1-201ENST00000384999 110 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
USF3Q68DE3 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.32□□□□□ -2.36
USF3Q68DE3 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.32□□□□□ -2.36
USF3Q68DE3 MTCYBP32-201ENST00000427945 1084 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AL353706.1-201ENST00000436728 494 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.32□□□□□ -2.36
USF3Q68DE3 AL157398.1-201ENST00000452981 186 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 RPS26P55-201ENST00000471178 356 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.32□□□□□ -2.36
USF3Q68DE3 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.32□□□□□ -2.36
USF3Q68DE3 BX322635.1-201ENST00000605804 496 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AC024257.5-201ENST00000612739 531 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
USF3Q68DE3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
USF3Q68DE3 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.32□□□□□ -2.36
USF3Q68DE3 RNA5SP501-201ENST00000410990 112 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 RPL26P27-201ENST00000414397 437 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AC099513.1-201ENST00000490423 301 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 RNA5SP285-201ENST00000516619 119 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.32□□□□□ -2.36
USF3Q68DE3 AC125611.1-201ENST00000549563 229 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.32□□□□□ -2.36
USF3Q68DE3 MIR4661-201ENST00000582720 75 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC0.32□□□□□ -2.36
USF3Q68DE3 AL021879.1-201ENST00000611756 288 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 U1.36-201ENST00000620684 176 ntBASIC0.32□□□□□ -2.36
USF3Q68DE3 SNORA4.1-201ENST00000364263 144 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 RNU6-611P-201ENST00000384276 104 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
USF3Q68DE3 RNA5SP100-201ENST00000410903 110 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 RNA5SP59-201ENST00000410922 110 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 AC097463.2-201ENST00000421074 142 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 FAM204CP-201ENST00000424489 642 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 C1DP1-201ENST00000426049 402 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 SNRPEP9-201ENST00000436794 238 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.31□□□□□ -2.36
USF3Q68DE3 RPL22P13-201ENST00000493291 347 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 AL133373.1-201ENST00000497098 94 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC0.31□□□□□ -2.36
USF3Q68DE3 SNORA31.17-201ENST00000516953 127 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.31□□□□□ -2.36
USF3Q68DE3 NACAP3-201ENST00000552100 481 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.31□□□□□ -2.36
USF3Q68DE3 MIR338-201ENST00000636369 67 ntBASIC0.31□□□□□ -2.36
USF3Q68DE3 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
USF3Q68DE3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
USF3Q68DE3 SNORD33-201ENST00000362761 85 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 SNORD115-3-201ENST00000363100 82 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MIR19B1-201ENST00000384829 87 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 RNA5SP299-201ENST00000391203 116 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MRPL35P1-201ENST00000404272 572 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC019070.1-201ENST00000415008 1024 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AL451054.2-201ENST00000420896 202 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.3□□□□□ -2.36
USF3Q68DE3 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.3□□□□□ -2.36
USF3Q68DE3 MTCO3P17-201ENST00000443775 513 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC0.3□□□□□ -2.36
USF3Q68DE3 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.3□□□□□ -2.36
USF3Q68DE3 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.3□□□□□ -2.36
USF3Q68DE3 RNA5SP291-201ENST00000517222 105 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 EIF4A1P12-201ENST00000551910 141 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 CYP3A52P-201ENST00000563326 91 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AL357094.1-201ENST00000603845 844 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AL133445.2-201ENST00000611191 527 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC009033.1-201ENST00000624279 431 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.3□□□□□ -2.36
USF3Q68DE3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.3□□□□□ -2.36
USF3Q68DE3 SNORA25B-201ENST00000365507 128 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
USF3Q68DE3 RNU6-1222P-201ENST00000384615 107 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MIR135A2-201ENST00000384854 100 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MIR518D-201ENST00000385014 87 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MIR1262-201ENST00000408276 93 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 NCOR1P3-201ENST00000420479 303 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 PGBD4P5-201ENST00000445958 426 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 FCF1P6-201ENST00000456841 595 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 RNA5SP57-201ENST00000459463 123 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 RPL32P14-201ENST00000463196 378 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MTND1P16-201ENST00000465177 898 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC087477.1-201ENST00000465747 340 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MIR4514-201ENST00000581410 57 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 BNIP3P27-201ENST00000599991 412 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC146944.4-201ENST00000602697 718 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC022387.2-201ENST00000604050 448 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 AC002550.2-201ENST00000621246 394 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 MTND1P37-201ENST00000636562 264 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 ZNF849P-201ENST00000594711 1566 ntBASIC0.3□□□□□ -2.36
USF3Q68DE3 SNORA29-201ENST00000384183 140 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AC009518.2-201ENST00000418056 731 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 PTGES3P4-201ENST00000426243 356 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms