Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CYCSP27-201ENST00000527643 293 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 CBX3P8-201ENST00000532412 525 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AC090615.1-201ENST00000577519 154 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AL353997.4-201ENST00000586196 166 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AC010900.2-201ENST00000604508 210 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 MIR6857-201ENST00000613267 93 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.87□□□□□ -2.27
CHD3Q12873 AC092140.2-201ENST00000618027 521 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 NACAP2-201ENST00000318548 624 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 MIR193B-201ENST00000384907 83 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 OR51A5P-201ENST00000415429 942 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD3Q12873 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD3Q12873 AC244505.3-201ENST00000454598 187 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 SNORD97-201ENST00000459187 142 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD3Q12873 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD3Q12873 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD3Q12873 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 RNU6-703P-201ENST00000516946 107 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 RNU6-1261P-201ENST00000517194 104 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD3Q12873 TRAV32-201ENST00000553993 340 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD3Q12873 AP003485.1-201ENST00000625093 753 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CHD3Q12873 RNU6-28P-201ENST00000362378 107 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 SNORD14D-201ENST00000384390 87 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 RNU6-1122P-201ENST00000384449 107 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC097463.2-201ENST00000421074 142 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 MTCO2P5-201ENST00000422621 426 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 TOMM22P2-201ENST00000430735 237 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD3Q12873 ZNF886P-201ENST00000450781 723 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD3Q12873 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.86□□□□□ -2.27
CHD3Q12873 AL157871.3-201ENST00000557231 293 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 MIR5708-201ENST00000579723 85 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 MIR4422-201ENST00000581938 83 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD3Q12873 AC087045.1-201ENST00000605856 382 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC021755.4-201ENST00000616620 456 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AL138955.1-201ENST00000622881 1040 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC097460.3-201ENST00000623099 442 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 AC007490.1-201ENST00000624321 703 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 MIR1322-201ENST00000638013 71 ntBASIC0.86□□□□□ -2.27
CHD3Q12873 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD3Q12873 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.85□□□□□ -2.27
CHD3Q12873 RNU6-858P-201ENST00000362436 107 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 RNU6-486P-201ENST00000363116 107 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 RNU6-343P-201ENST00000364709 104 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 RNU6-160P-201ENST00000384591 107 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 HMGB1P17-201ENST00000403495 628 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 RNU2-48P-201ENST00000410694 191 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 MTCYBP38-201ENST00000417160 1123 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 AC138623.1-201ENST00000418060 216 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 USP9YP21-201ENST00000420603 432 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.85□□□□□ -2.27
CHD3Q12873 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 MTCO1P3-201ENST00000429327 192 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 COX7BP2-201ENST00000437976 242 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
CHD3Q12873 snoU13.8-201ENST00000458890 104 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 RPL9P9-202ENST00000466501 579 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.85□□□□□ -2.27
CHD3Q12873 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.85□□□□□ -2.27
CHD3Q12873 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.85□□□□□ -2.27
CHD3Q12873 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD3Q12873 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.85□□□□□ -2.27
CHD3Q12873 IMMP1LP2-201ENST00000552954 492 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 SNRPGP1-201ENST00000553864 222 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 MIR3167-201ENST00000579623 85 ntBASIC0.85□□□□□ -2.27
CHD3Q12873 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
CHD3Q12873 RNA5SP62-201ENST00000363457 110 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 RNU6-338P-201ENST00000383888 105 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 MIR532-201ENST00000385025 91 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 RNU6-1300P-201ENST00000391046 108 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 RNU1-78P-201ENST00000391248 165 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 AL449283.1-202ENST00000418249 604 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 AC005094.1-201ENST00000440420 368 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.84□□□□□ -2.27
CHD3Q12873 OR6C5P-201ENST00000452388 923 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.84□□□□□ -2.27
CHD3Q12873 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.84□□□□□ -2.27
CHD3Q12873 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.84□□□□□ -2.27
CHD3Q12873 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.84□□□□□ -2.27
CHD3Q12873 TMEM251P1-201ENST00000503717 318 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.84□□□□□ -2.27
CHD3Q12873 AC024589.1-201ENST00000512207 263 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.84□□□□□ -2.27
CHD3Q12873 AL136520.1-202ENST00000555494 763 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 HSPE1P19-201ENST00000603327 295 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
CHD3Q12873 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 MTND5P9-201ENST00000503854 1755 ntBASIC0.84□□□□□ -2.27
CHD3Q12873 HAUS6P2-201ENST00000433254 2404 ntBASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms