Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU7-169P-201ENST00000459456 61 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RPS4XP13-201ENST00000483219 789 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA4Q00056 NDUFB4P9-201ENST00000511646 388 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU6-475P-201ENST00000516073 104 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 AC090281.1-201ENST00000523019 276 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AC012468.1-201ENST00000604888 430 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 AC008962.1-201ENST00000605729 304 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA4Q00056 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA4Q00056 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA4Q00056 AC008669.1-201ENST00000565823 2178 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 ZNF299P-201ENST00000406845 1804 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 AL672296.1-201ENST00000427780 2158 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA4Q00056 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 RNU1-18P-201ENST00000363062 164 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 Y_RNA.149-201ENST00000363558 117 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 RNA5SP322-201ENST00000363617 119 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 Y_RNA.193-201ENST00000363979 102 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 SET-203ENST00000372688 801 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA4Q00056 SNORA5A-201ENST00000384111 134 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 RNU6-505P-201ENST00000384427 107 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 RPS29P13-201ENST00000402041 169 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA4Q00056 EIF4EP2-201ENST00000422816 654 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 HMGB3P8-201ENST00000449709 577 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC133473.1-201ENST00000455173 299 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA4Q00056 RPS29P20-201ENST00000489592 171 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXA4Q00056 AC010265.1-201ENST00000513509 211 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA4Q00056 RNU1-95P-201ENST00000516357 160 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 MIR2114-201ENST00000516645 80 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 RNU6-635P-201ENST00000516651 102 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 SNORA43.2-201ENST00000516652 128 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 SNORA67.7-201ENST00000516664 135 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 RNU1-128P-201ENST00000516704 160 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 Y_RNA.721-201ENST00000517207 102 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 MIR5701-3-201ENST00000578890 82 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 MIR5187-201ENST00000583479 76 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 MIR5701-1-201ENST00000585138 82 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC020895.1-201ENST00000595362 272 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AL355598.1-201ENST00000604169 202 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC124312.5-201ENST00000604451 268 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA4Q00056 MIR5701-2-201ENST00000615634 82 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 U4.6-201ENST00000621618 127 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 AC097372.5-201ENST00000623665 376 ntBASIC3.07□□□□□ -1.92
HOXA4Q00056 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXA4Q00056 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA4Q00056 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA4Q00056 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA4Q00056 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA4Q00056 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA4Q00056 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA4Q00056 OTUD4P1-201ENST00000237841 3067 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 SNORD9-201ENST00000362566 104 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 RNA5SP502-201ENST00000362694 119 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 RNU6-227P-201ENST00000362865 103 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 RNU6-942P-201ENST00000363002 107 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 Y_RNA.106-201ENST00000363189 100 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 Y_RNA.176-201ENST00000363815 109 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 SNORD14.1-201ENST00000365609 90 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
HOXA4Q00056 AL359837.1-201ENST00000381357 287 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 Y_RNA.452-201ENST00000384202 108 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXA4Q00056 HSPE1P26-201ENST00000405341 275 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 RNA5SP494-201ENST00000410653 129 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA4Q00056 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA4Q00056 HMGN2P30-201ENST00000423237 256 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 TMEM167AP1-201ENST00000423409 219 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 AC092423.1-201ENST00000430165 186 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 AC091286.1-201ENST00000431233 461 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA4Q00056 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA4Q00056 AC079354.2-201ENST00000453523 154 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 SNRPGP5-201ENST00000456003 220 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 RNA5SP310-201ENST00000459084 116 ntBASIC3.06□□□□□ -1.92
HOXA4Q00056 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms