Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNORA40C-201ENST00000391285 128 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
FOXA1P55317 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 RPS15AP12-201ENST00000419498 388 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 AL591704.1-201ENST00000432574 275 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AL606517.1-201ENST00000446914 387 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC055731.1-201ENST00000474387 401 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 MTND2P14-201ENST00000482139 351 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 RPL36AP48-201ENST00000485521 314 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.45□□□□□ -2.18
FOXA1P55317 AC011005.2-201ENST00000487324 359 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC068781.1-201ENST00000488231 618 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 RPS3AP22-201ENST00000488297 769 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 MRPS33P3-201ENST00000513456 322 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 RNU2-10P-201ENST00000516375 211 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 ELOCP32-201ENST00000548625 324 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC091489.2-201ENST00000566263 604 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC012213.3-201ENST00000577199 777 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA1P55317 AC034229.4-201ENST00000607861 441 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AP000240.1-201ENST00000609910 452 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AL355816.2-201ENST00000610049 647 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AL050303.3-201ENST00000613704 284 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 AC104010.1-201ENST00000616889 150 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
FOXA1P55317 AL445523.1-201ENST00000451184 1362 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
FOXA1P55317 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA1P55317 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU5F-6P-201ENST00000362979 116 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU6-960P-201ENST00000364056 120 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU6-533P-201ENST00000384144 107 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU6-190P-201ENST00000384154 102 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AL133475.1-201ENST00000404414 305 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU6-1025P-201ENST00000410629 104 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU2-63P-201ENST00000410792 194 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.44□□□□□ -2.18
FOXA1P55317 AC006366.1-201ENST00000422002 759 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA1P55317 RPS15AP9-201ENST00000439856 381 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AL078601.1-201ENST00000444542 271 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 MTND1P12-201ENST00000455231 147 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 BTF3P15-201ENST00000455606 336 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC023790.1-201ENST00000482174 347 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC112204.1-201ENST00000502591 103 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC109927.2-201ENST00000506416 303 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 AC008526.1-201ENST00000509149 338 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA1P55317 AF213884.2-201ENST00000510417 903 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AF131216.2-201ENST00000512316 564 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 RNA5SP61-201ENST00000516453 100 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 RNU6-678P-201ENST00000516832 109 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC022880.1-201ENST00000534017 973 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 AL157871.3-201ENST00000557231 293 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA1P55317 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.44□□□□□ -2.18
FOXA1P55317 AC008751.2-201ENST00000597885 980 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC005034.5-201ENST00000604219 466 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC105129.3-201ENST00000605455 485 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC068787.1-201ENST00000623908 691 ntBASIC1.44□□□□□ -2.18
FOXA1P55317 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA1P55317 RNU1-72P-201ENST00000362976 153 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 RNU6-501P-201ENST00000364072 100 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 Y_RNA.338-201ENST00000365320 114 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 RNU6-166P-201ENST00000384371 107 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 SNORD115.1-201ENST00000391109 76 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AC097463.2-201ENST00000421074 142 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA1P55317 AL365184.2-201ENST00000431139 435 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AL008629.1-201ENST00000438615 184 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 PMCHL2-203ENST00000457791 237 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC112771.1-201ENST00000463581 102 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.43□□□□□ -2.18
FOXA1P55317 Y_RNA.689-201ENST00000516589 107 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 HSBP1P1-201ENST00000555205 166 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 PCMTD1P2-201ENST00000565017 355 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA1P55317 MIR1273C-201ENST00000578669 77 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms