Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD9P28356 RNU6-266P-201ENST00000364225 107 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 SNORA54-201ENST00000384281 123 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 RNU6-308P-201ENST00000390957 107 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 RNU6-1050P-201ENST00000410388 107 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD9P28356 AL590632.1-201ENST00000424289 371 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD9P28356 AL035666.1-201ENST00000446195 348 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 RNU7-138P-201ENST00000459479 64 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD9P28356 AL049874.1-201ENST00000489560 388 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD9P28356 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
HOXD9P28356 AC096745.1-201ENST00000509945 370 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AC008885.1-201ENST00000514930 301 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 Y_RNA.708-201ENST00000516950 96 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 RNU6-1213P-201ENST00000517075 94 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 RNU1-54P-201ENST00000517181 120 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD9P28356 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD9P28356 LRRC37A5P-203ENST00000580181 585 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AC007938.3-201ENST00000604965 623 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AC002044.1-201ENST00000606707 158 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD9P28356 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD9P28356 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD9P28356 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
HOXD9P28356 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
HOXD9P28356 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD9P28356 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD9P28356 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD9P28356 UBE2L2-201ENST00000254302 429 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 SNORD62.1-201ENST00000362541 86 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 Y_RNA.133-201ENST00000363428 110 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 Y_RNA.252-201ENST00000364556 101 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 MIR578-201ENST00000384828 96 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 MIR514A1-201ENST00000385133 98 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 SNORA75.6-201ENST00000391318 127 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 RNU6-607P-201ENST00000411283 108 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AL353621.1-201ENST00000418219 243 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 UBE2V1P4-201ENST00000425374 344 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AL356867.1-201ENST00000429623 299 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD9P28356 RPS24P13-201ENST00000442520 397 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD9P28356 RPS15AP34-201ENST00000487776 387 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 SUMO2P6-201ENST00000505273 288 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 Y_RNA.670-201ENST00000516255 105 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 RN7SKP295-201ENST00000517264 153 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD9P28356 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD9P28356 MIR548AC-201ENST00000585049 88 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AC107294.1-201ENST00000609524 467 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 PISRT1.1-201ENST00000616930 107 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AL031601.2-202ENST00000622650 282 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 AC099506.2-201ENST00000623074 221 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD9P28356 MIR622-201ENST00000638396 96 ntBASIC3.21□□□□□ -1.9
HOXD9P28356 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD9P28356 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD9P28356 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD9P28356 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD9P28356 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD9P28356 MTND5P30-201ENST00000452896 1731 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.144-201ENST00000363521 113 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.148-201ENST00000363557 117 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 RNU6-1303P-201ENST00000364841 107 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.404-201ENST00000383978 102 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.459-201ENST00000384251 102 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXD9P28356 RPS4XP3-201ENST00000398541 413 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL138885.1-201ENST00000405921 675 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.594-201ENST00000410373 140 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL159169.1-201ENST00000421119 127 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL358176.2-201ENST00000425769 204 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD9P28356 MTND5P22-201ENST00000458380 195 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 MTND3P25-201ENST00000509243 135 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC008716.1-201ENST00000511084 513 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC092436.3-201ENST00000511788 257 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 Y_RNA.720-201ENST00000517166 92 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC069113.1-201ENST00000517763 267 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC009902.1-201ENST00000519351 183 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC025423.5-201ENST00000550230 219 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 DNAJC8P1-201ENST00000554535 372 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 MIR3671-201ENST00000580455 88 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AC009229.3-201ENST00000608056 282 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL161423.1-201ENST00000613700 262 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 MIR6076-201ENST00000617521 113 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 AL078596.1-201ENST00000624856 447 ntBASIC3.2□□□□□ -1.9
HOXD9P28356 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD9P28356 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD9P28356 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD9P28356 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD9P28356 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD9P28356 AC005183.1-201ENST00000603687 1979 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms