Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
SDC1P18827 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
SDC1P18827 AL359854.1-201ENST00000614203 1594 ntBASIC2.15□□□□□ -2.07
SDC1P18827 ZNF680P1-201ENST00000436625 1469 ntBASIC2.14□□□□□ -2.07
SDC1P18827 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 MTND4P27-201ENST00000450813 1354 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL139276.1-201ENST00000311910 1001 ntBASIC2.14□□□□□ -2.07
SDC1P18827 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SDC1P18827 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SDC1P18827 RNU6-942P-201ENST00000363002 107 ntBASIC2.14□□□□□ -2.07
SDC1P18827 RNU6-606P-201ENST00000384721 111 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC068050.1-201ENST00000394891 380 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL133475.1-201ENST00000404414 305 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL353621.1-201ENST00000418219 243 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 RPL30P4-201ENST00000429309 333 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 HIGD1AP2-201ENST00000446367 280 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL118520.1-201ENST00000450770 291 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC104435.1-201ENST00000483483 166 ntBASIC2.14□□□□□ -2.07
SDC1P18827 MTCO3P9-201ENST00000506989 781 ntBASIC2.14□□□□□ -2.07
SDC1P18827 MTND3P25-201ENST00000509243 135 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 SNORA31.18-201ENST00000517043 134 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 OR5AQ1P-201ENST00000527596 927 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 MIR5694-201ENST00000581190 76 ntBASIC2.14□□□□□ -2.07
SDC1P18827 MIR3616-201ENST00000584070 92 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.14□□□□□ -2.07
SDC1P18827 AL670379.10-201ENST00000604330 253 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL670379.9-201ENST00000605428 253 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AL021997.1-201ENST00000605757 193 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC1P18827 AC092656.1-203ENST00000624134 423 ntBASIC2.14□□□□□ -2.07
SDC1P18827 AC138627.2-201ENST00000624202 601 ntBASIC2.14□□□□□ -2.07
SDC1P18827 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.14□□□□□ -2.07
SDC1P18827 MTND5P30-201ENST00000452896 1731 ntBASIC2.14□□□□□ -2.07
SDC1P18827 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SDC1P18827 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SDC1P18827 SNORA67.1-201ENST00000364749 141 ntBASIC2.13□□□□□ -2.07
SDC1P18827 RNU6-715P-201ENST00000365204 103 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 RNU6-1103P-201ENST00000384150 107 ntBASIC2.13□□□□□ -2.07
SDC1P18827 Y_RNA.582-201ENST00000391023 95 ntBASIC2.13□□□□□ -2.07
SDC1P18827 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.13□□□□□ -2.07
SDC1P18827 BTF3L4P1-201ENST00000413813 468 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 PGBD4P6-201ENST00000421501 610 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MTCO2P19-201ENST00000427513 598 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AL669831.1-202ENST00000428504 417 ntBASIC2.13□□□□□ -2.07
SDC1P18827 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 AL451074.3-201ENST00000437709 472 ntBASIC2.13□□□□□ -2.07
SDC1P18827 GTF2IP13-201ENST00000438487 386 ntBASIC2.13□□□□□ -2.07
SDC1P18827 CALM1P1-201ENST00000442082 433 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MTCO2P18-201ENST00000457151 658 ntBASIC2.13□□□□□ -2.07
SDC1P18827 RPS3AP17-201ENST00000472594 777 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 AC091133.4-201ENST00000511142 308 ntBASIC2.13□□□□□ -2.07
SDC1P18827 SNORA25.11-201ENST00000515935 105 ntBASIC2.13□□□□□ -2.07
SDC1P18827 Y_RNA.687-201ENST00000516558 91 ntBASIC2.13□□□□□ -2.07
SDC1P18827 SCARNA3-201ENST00000517097 143 ntBASIC2.13□□□□□ -2.07
SDC1P18827 RNU1-104P-201ENST00000517280 175 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MTCYBP33-201ENST00000575007 1130 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MIR5692A1-201ENST00000580523 69 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AC008945.2-201ENST00000606056 604 ntBASIC2.13□□□□□ -2.07
SDC1P18827 RMST_4.1-201ENST00000616886 107 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AC048344.4-201ENST00000619744 527 ntBASIC2.13□□□□□ -2.07
SDC1P18827 AC009831.4-201ENST00000620744 325 ntBASIC2.13□□□□□ -2.07
SDC1P18827 MIR7157-201ENST00000635801 60 ntBASIC2.13□□□□□ -2.07
SDC1P18827 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.13□□□□□ -2.07
SDC1P18827 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC1P18827 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC1P18827 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
SDC1P18827 RNU6-1120P-201ENST00000362988 108 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RNU6-1072P-201ENST00000384703 107 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RNU6-443P-201ENST00000384780 107 ntBASIC2.12□□□□□ -2.07
SDC1P18827 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SDC1P18827 GSTA9P-201ENST00000406231 611 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RNU2-3P-201ENST00000410144 191 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RNU4-46P-201ENST00000410818 138 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC1P18827 MTCO3P30-201ENST00000426425 670 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC1P18827 AC073464.1-201ENST00000429823 534 ntBASIC2.12□□□□□ -2.07
SDC1P18827 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC1P18827 USP9YP14-201ENST00000430663 563 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 154.3 ms