Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC108078.1-201ENST00000508073 725 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.56□□□□□ -1.84
HMGB1P09429 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.56□□□□□ -1.84
HMGB1P09429 AC023050.3-201ENST00000541142 333 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC009127.3-201ENST00000570531 403 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 MTCO3P13-201ENST00000577757 781 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 MIR5583-1-201ENST00000580941 59 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 MIR3944-201ENST00000581277 108 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.56□□□□□ -1.84
HMGB1P09429 SRGNP1-201ENST00000603392 451 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC091805.2-201ENST00000603848 235 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC007318.2-201ENST00000620999 243 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 AC012640.5-201ENST00000623897 319 ntBASIC3.56□□□□□ -1.84
HMGB1P09429 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.56□□□□□ -1.84
HMGB1P09429 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
HMGB1P09429 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
HMGB1P09429 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.55□□□□□ -1.84
HMGB1P09429 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.55□□□□□ -1.84
HMGB1P09429 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.55□□□□□ -1.84
HMGB1P09429 snoU2_19.1-201ENST00000362361 80 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 Y_RNA.51-201ENST00000362725 102 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 SNORA25B-201ENST00000365507 128 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HMGB1P09429 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.55□□□□□ -1.84
HMGB1P09429 AC112220.1-201ENST00000434628 355 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HMGB1P09429 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.55□□□□□ -1.84
HMGB1P09429 AL031274.1-201ENST00000450334 232 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 AC011753.1-201ENST00000451001 220 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.55□□□□□ -1.84
HMGB1P09429 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.55□□□□□ -1.84
HMGB1P09429 SNORA31.15-201ENST00000516771 132 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.55□□□□□ -1.84
HMGB1P09429 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.55□□□□□ -1.84
HMGB1P09429 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HMGB1P09429 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.55□□□□□ -1.84
HMGB1P09429 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.55□□□□□ -1.84
HMGB1P09429 AL049779.4-201ENST00000604500 156 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 AP003400.5-201ENST00000624827 617 ntBASIC3.55□□□□□ -1.84
HMGB1P09429 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
HMGB1P09429 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HMGB1P09429 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HMGB1P09429 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
HMGB1P09429 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HMGB1P09429 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HMGB1P09429 AL353193.1-201ENST00000421444 268 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HMGB1P09429 AC016691.1-201ENST00000441321 413 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC007969.2-201ENST00000441891 191 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC027673.1-201ENST00000456245 405 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AL122001.1-201ENST00000457027 370 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC117440.1-201ENST00000474107 571 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC009812.2-201ENST00000517657 457 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC107016.2-201ENST00000547968 190 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.54□□□□□ -1.84
HMGB1P09429 NBR2-204ENST00000587322 63 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.54□□□□□ -1.84
HMGB1P09429 AC078795.2-201ENST00000602835 1252 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC107304.1-201ENST00000604229 296 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 U2.17-201ENST00000611454 95 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC022202.1-201ENST00000613515 211 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 AC084035.1-201ENST00000634543 607 ntBASIC3.54□□□□□ -1.84
HMGB1P09429 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HMGB1P09429 MTND5P19-201ENST00000424872 1794 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HMGB1P09429 RNU6-105P-201ENST00000363909 104 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 RNU6-266P-201ENST00000364225 107 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 SNORA71.1-201ENST00000364523 117 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 SNORD37.1-201ENST00000390968 65 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 RN7SKP58-201ENST00000411010 305 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 RNU6-293P-201ENST00000411259 106 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 SNORD56-201ENST00000413522 71 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.53□□□□□ -1.84
HMGB1P09429 AL163973.1-201ENST00000484753 577 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.53□□□□□ -1.84
HMGB1P09429 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.53□□□□□ -1.84
HMGB1P09429 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
HMGB1P09429 AC008885.1-201ENST00000514930 301 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.53□□□□□ -1.84
HMGB1P09429 AGGF1P4-201ENST00000568249 801 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.53□□□□□ -1.84
HMGB1P09429 ELOCP5-201ENST00000604924 333 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 MIR92B-201ENST00000607575 96 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 AC010297.1-201ENST00000623948 149 ntBASIC3.53□□□□□ -1.84
HMGB1P09429 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.53□□□□□ -1.84
HMGB1P09429 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HMGB1P09429 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.53□□□□□ -1.84
HMGB1P09429 AC009487.2-201ENST00000420969 6821 ntBASIC3.53□□□□□ -1.85
HMGB1P09429 AL353743.1-202ENST00000431724 1695 ntBASIC3.52□□□□□ -1.85
HMGB1P09429 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HMGB1P09429 AP006437.1-201ENST00000641440 3685 ntBASIC3.52□□□□□ -1.85
HMGB1P09429 RNU6-1274P-201ENST00000384557 107 ntBASIC3.52□□□□□ -1.85
HMGB1P09429 RNU6-1158P-201ENST00000391167 107 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms