Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GPM6BP3-201ENST00000442797 145 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.16□□□□□ -2.06
CLDN3O15551 AC079804.2-201ENST00000490376 200 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 Y_RNA.672-201ENST00000516289 104 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 MIR514B-201ENST00000516774 80 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN3O15551 MTCYBP33-201ENST00000575007 1130 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.16□□□□□ -2.06
CLDN3O15551 AC007229.1-201ENST00000590455 412 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 AC002984.1-201ENST00000591692 448 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 NDUFA8P1-201ENST00000605525 367 ntBASIC2.16□□□□□ -2.06
CLDN3O15551 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CLDN3O15551 ZNF355P-201ENST00000427301 3216 ntBASIC2.15□□□□□ -2.06
CLDN3O15551 RNU6-72P-201ENST00000384285 79 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 SNORA24.1-201ENST00000384401 135 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 Y_RNA.560-201ENST00000384689 102 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AC019129.1-201ENST00000403786 261 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 U3.40-201ENST00000408706 208 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN3O15551 MED13P1-201ENST00000428342 171 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN3O15551 AC107032.1-201ENST00000485945 480 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 SNORA48.11-201ENST00000517015 89 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 SNORA31.25-201ENST00000517242 134 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.15□□□□□ -2.07
CLDN3O15551 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN3O15551 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CLDN3O15551 AC078899.2-201ENST00000595282 212 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AC021646.1-201ENST00000605469 484 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AC022202.1-201ENST00000613515 211 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AL031601.2-202ENST00000622650 282 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 AL157786.1-207ENST00000627771 695 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.15□□□□□ -2.07
CLDN3O15551 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN3O15551 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CLDN3O15551 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CLDN3O15551 SNORD14B-201ENST00000364533 90 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 RNU6-843P-201ENST00000384454 104 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 MIR558-201ENST00000384920 94 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 MIR95-201ENST00000385072 81 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 RPS3AP36-201ENST00000398190 775 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AL591034.2-201ENST00000402839 359 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 RNU2-8P-201ENST00000410727 190 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AC055731.1-201ENST00000474387 401 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.14□□□□□ -2.07
CLDN3O15551 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.14□□□□□ -2.07
CLDN3O15551 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.14□□□□□ -2.07
CLDN3O15551 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.14□□□□□ -2.07
CLDN3O15551 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.14□□□□□ -2.07
CLDN3O15551 MTND1P24-201ENST00000552175 861 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 RPL21P5-201ENST00000554662 472 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AC009094.1-201ENST00000564443 426 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN3O15551 MIR4529-201ENST00000578110 78 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AC090616.2-202ENST00000584248 222 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 AL138889.2-201ENST00000603883 242 ntBASIC2.14□□□□□ -2.07
CLDN3O15551 SNORA25B-201ENST00000365507 128 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 SNORA20.2-201ENST00000383922 131 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 RPL23AP32-201ENST00000395315 459 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.13□□□□□ -2.07
CLDN3O15551 Y_RNA.598-201ENST00000410480 95 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.13□□□□□ -2.07
CLDN3O15551 AC008267.5-201ENST00000424928 265 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDN3O15551 RNU7-125P-201ENST00000458760 62 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDN3O15551 AC005178.1-201ENST00000508392 440 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 RNU6-1129P-201ENST00000515964 104 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 RNU2-53P-201ENST00000516257 147 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDN3O15551 AC093249.1-201ENST00000567049 203 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDN3O15551 AL031274.2-201ENST00000599419 203 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.13□□□□□ -2.07
CLDN3O15551 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDN3O15551 AL022161.1-201ENST00000604390 213 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AL670379.4-201ENST00000605279 254 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC009318.2-201ENST00000610917 651 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 uc_338.15-201ENST00000615470 191 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC090517.3-201ENST00000625170 141 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 AC099654.13-201ENST00000639774 207 ntBASIC2.13□□□□□ -2.07
CLDN3O15551 RNU6-1010P-201ENST00000362757 107 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 RNU6-942P-201ENST00000363002 107 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 RNU1-23P-201ENST00000363361 144 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 SNORD116-20-201ENST00000384529 92 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 MIR578-201ENST00000384828 96 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 MIR186-201ENST00000384988 86 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 TOMM20P4-201ENST00000427861 435 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AL365400.1-201ENST00000431854 640 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 HMGN2P3-201ENST00000433603 273 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 HMGN2P5-201ENST00000436882 273 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 MTND1P30-201ENST00000441241 901 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 CALM1P1-201ENST00000442082 433 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 NDUFB1P2-201ENST00000449477 176 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 KATNBL1P6-201ENST00000453433 915 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 RNA5SP233-201ENST00000459153 113 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 RBBP4P6-201ENST00000508098 202 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms