Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC105245.1-201ENST00000581934 244 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC011890.2-201ENST00000613393 294 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC072046.2-201ENST00000618366 268 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC010378.1-201ENST00000619270 362 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AL359740.1-201ENST00000624340 592 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 ZNF658B-202ENST00000615961 3375 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 RNU6-858P-201ENST00000362436 107 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 RNU6-371P-201ENST00000364283 108 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 SNORD14B-201ENST00000364533 90 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 RNU6-74P-201ENST00000384235 107 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 SNORD116-2-201ENST00000384274 95 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 SNORD116-6-201ENST00000384711 96 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MIR578-201ENST00000384828 96 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MIR1-2-201ENST00000384961 85 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MIR10A-201ENST00000385043 110 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 CIR1P3-201ENST00000405137 479 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC007064.1-201ENST00000412238 351 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 EEF1A1P40-201ENST00000412883 573 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC097463.2-201ENST00000421074 142 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AL358934.1-201ENST00000432346 324 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MTCO3P5-201ENST00000433620 714 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MTCO1P19-201ENST00000443487 500 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC079448.1-201ENST00000449377 373 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 snoU109.2-201ENST00000459316 135 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 KLF3P2-201ENST00000465138 268 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MRPL42P6-201ENST00000486397 371 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC011005.2-201ENST00000487324 359 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MTAPP1-201ENST00000489154 819 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 FAM92A1P1-201ENST00000528023 890 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AP000873.5-201ENST00000533906 236 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC009063.1-201ENST00000563342 702 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC006362.1-201ENST00000567392 174 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 MIR4528-201ENST00000577763 90 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.27□□□□□ -2.05
LHX3Q9UBR4 RNU6-91P-201ENST00000607774 107 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC109347.2-201ENST00000610220 349 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AL137847.3-201ENST00000611521 109 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 HMGB1P24-202ENST00000615653 685 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 AC244517.12-201ENST00000623581 663 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 Z75746.1-201ENST00000440243 2080 ntBASIC2.27□□□□□ -2.05
LHX3Q9UBR4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 Y_RNA.77-201ENST00000362962 107 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 SNORA38-201ENST00000363946 132 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 SNORA62.1-201ENST00000364287 154 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 SNORA75-201ENST00000384158 137 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 RNU6-301P-201ENST00000384277 107 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 Y_RNA.553-201ENST00000384670 102 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 MIR454-201ENST00000390180 115 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 HMGN2P35-201ENST00000412164 270 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 OR6C66P-201ENST00000414917 930 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 RPL21P90-201ENST00000415692 466 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 MTCO2P34-201ENST00000421994 607 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC133104.1-201ENST00000429100 218 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AL360221.1-201ENST00000445989 335 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AL360271.2-201ENST00000447710 161 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC104058.1-201ENST00000448028 297 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC112771.1-201ENST00000463581 102 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC010424.1-201ENST00000506336 297 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AP002770.2-201ENST00000543613 532 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC009163.5-201ENST00000575421 637 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 MIR4658-201ENST00000584344 65 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 RSL24D1P11-201ENST00000591045 491 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AC024581.2-201ENST00000619986 252 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.26□□□□□ -2.05
LHX3Q9UBR4 HSPA8P4-201ENST00000511877 1920 ntBASIC2.26□□□□□ -2.05
LHX3Q9UBR4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-1287P-201ENST00000362914 107 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-181P-201ENST00000363225 107 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms