Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MIR4765-201ENST00000585007 77 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 Z84480.1-201ENST00000605131 311 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL670379.4-201ENST00000605279 254 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL021997.1-201ENST00000605757 193 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC098614.4-201ENST00000607601 462 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC093648.1-201ENST00000623546 606 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 SNORD3E-201ENST00000362899 217 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 RNU6-179P-201ENST00000363350 107 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 RNU6-395P-201ENST00000365662 106 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 MICF-203ENST00000432679 129 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 BTF3P15-201ENST00000455606 336 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 MTND4P2-201ENST00000507767 1203 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.688-201ENST00000516565 95 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 SCARNA3-201ENST00000517097 143 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AC110760.3-201ENST00000598794 467 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AL022154.1-201ENST00000604698 785 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 uc_338.14-201ENST00000613162 166 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 MIR6895-201ENST00000613497 78 ntBASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.39□□□□□ -2.03
VPS54Q9P1Q0 CDC27P3-201ENST00000635418 1910 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 RNA5SP160-201ENST00000364866 120 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 RNU6-282P-201ENST00000365357 103 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MIR1302-8-201ENST00000408342 128 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC016831.2-201ENST00000417179 352 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 CALM2P2-201ENST00000428512 440 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 USP9YP8-201ENST00000441913 500 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MTND1P27-201ENST00000451117 902 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AP001324.2-201ENST00000461163 319 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC023194.1-201ENST00000493084 308 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MTCO3P28-201ENST00000513351 515 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC112206.3-201ENST00000514578 389 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC117532.1-201ENST00000514638 323 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MTND2P38-201ENST00000522536 667 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC010620.1-201ENST00000601088 1102 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC245014.2-201ENST00000603689 287 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC246785.4-201ENST00000605374 287 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC087752.4-201ENST00000605911 462 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MIR203B-201ENST00000636080 86 ntBASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS54Q9P1Q0 MTND5P30-201ENST00000452896 1731 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 SNORD115-7-201ENST00000365306 82 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 RNU6-348P-201ENST00000384386 107 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.576-201ENST00000384781 102 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 MIR578-201ENST00000384828 96 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 MIR144-201ENST00000384886 86 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 GPR143P-201ENST00000434155 205 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 RPL23AP7-203ENST00000449021 469 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 snoU109.2-201ENST00000459316 135 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC011005.2-201ENST00000487324 359 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 ACA59.2-201ENST00000517061 156 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 IGKV3-31-201ENST00000523109 329 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 OR5AL2P-201ENST00000532185 920 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC010186.2-204ENST00000537668 439 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC135279.1-201ENST00000543493 504 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC092325.1-201ENST00000566449 554 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 MIR4528-201ENST00000577763 90 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 MIR5694-201ENST00000581190 76 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AL359740.1-201ENST00000624340 592 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 MIR7157-201ENST00000635801 60 ntBASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS54Q9P1Q0 HSPA8P4-201ENST00000511877 1920 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL359854.1-201ENST00000614203 1594 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL109809.4-201ENST00000603520 2185 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms