Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC092656.1-203ENST00000624134 423 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RNU6-1287P-201ENST00000362914 107 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RNU6-486P-201ENST00000363116 107 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 SNORD14B-201ENST00000364533 90 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RNU4-48P-201ENST00000365559 182 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RNU6-1060P-201ENST00000384664 107 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 MIR218-1-201ENST00000384999 110 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 MIR34A-201ENST00000385130 110 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RNU6-220P-201ENST00000390919 107 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AL139039.1-201ENST00000401900 692 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 CIR1P3-201ENST00000405137 479 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 FTH1P15-201ENST00000406984 280 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 U6atac.2-201ENST00000408644 118 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 RPL21P90-201ENST00000415692 466 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 BX276092.3-201ENST00000424182 230 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 MTCO2P16-201ENST00000436962 677 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 MTND4P32-201ENST00000437189 1237 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AL360271.2-201ENST00000447710 161 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC080013.2-201ENST00000460866 323 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 MTAPP1-201ENST00000489154 819 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC114781.4-201ENST00000513707 639 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 FAM92A1P1-201ENST00000528023 890 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC079600.2-201ENST00000550076 130 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC025678.1-201ENST00000567861 338 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC098614.4-201ENST00000607601 462 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 uc_338.11-201ENST00000619132 160 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC244517.12-201ENST00000623581 663 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 AC090582.1-201ENST00000636321 199 ntBASIC2.34□□□□□ -2.03
DDX28Q9NUL7 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.34□□□□□ -2.04
DDX28Q9NUL7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
DDX28Q9NUL7 AL596028.1-201ENST00000326971 197 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC138393.1-203ENST00000327086 343 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC062016.1-201ENST00000355719 319 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RNU1-112P-201ENST00000364401 164 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RNU6-116P-201ENST00000384042 109 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 SNORD116-1-201ENST00000384335 95 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 MIR10A-201ENST00000385043 110 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 MTCO2P34-201ENST00000421994 607 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 OOSP1P1-201ENST00000423265 274 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RPS12P2-201ENST00000439728 269 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AL360221.1-201ENST00000445989 335 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RPL36AP48-201ENST00000485521 314 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 HMGB1P30-201ENST00000492455 606 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RN7SKP132-201ENST00000516001 208 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC010186.2-204ENST00000537668 439 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC121758.2-201ENST00000553271 193 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC006362.1-201ENST00000567392 174 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 MIR4635-201ENST00000583759 79 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 RN7SKP299-201ENST00000606679 301 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC069294.1-201ENST00000608397 350 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC091834.1-201ENST00000614543 472 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC005336.3-201ENST00000623833 2679 ntBASIC2.33□□□□□ -2.04
DDX28Q9NUL7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 RNU4-82P-201ENST00000362443 140 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 SNORA38-201ENST00000363946 132 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 U8.8-201ENST00000365399 135 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 SNORD116-2-201ENST00000384274 95 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 RNU6-72P-201ENST00000384285 79 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 SNORD116-6-201ENST00000384711 96 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 RNU6-550P-201ENST00000391057 101 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 CDK8P2-201ENST00000415020 547 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL353621.1-201ENST00000418219 243 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC097463.2-201ENST00000421074 142 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 RPL30P4-201ENST00000429309 333 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 MTCO2P11-201ENST00000431069 680 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL358934.1-201ENST00000432346 324 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL596276.1-201ENST00000434465 418 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms