Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC116562.3-201ENST00000506136 177 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AF213884.2-201ENST00000510417 903 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC068587.5-201ENST00000528506 175 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC087241.2-201ENST00000535801 324 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC096772.1-201ENST00000609146 564 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 AC091931.1-201ENST00000623488 728 ntBASIC2.37□□□□□ -2.03
ZNF560Q96MR9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
ZNF560Q96MR9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 CKAP2P1-201ENST00000555477 2049 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 OR56A5-201ENST00000340110 738 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 RNU6-179P-201ENST00000363350 107 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 Y_RNA.169-201ENST00000363745 96 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 OR5H15-201ENST00000383696 930 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 SNORA48.3-201ENST00000391081 134 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 SNORA26.8-201ENST00000391306 124 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 OOSP1P1-201ENST00000423265 274 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 MTATP6P16-201ENST00000434543 526 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 GAPDHP17-201ENST00000449858 1001 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC112771.1-201ENST00000463581 102 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 SMURF2P1-201ENST00000514992 481 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 DUXAP5-201ENST00000529668 529 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC025678.1-201ENST00000567861 338 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 DEFB131E-202ENST00000602581 683 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AL121992.2-201ENST00000606262 256 ntBASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF560Q96MR9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 FGF7P2-201ENST00000332473 296 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 SNORD3E-201ENST00000362899 217 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 RNU6-371P-201ENST00000364283 108 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 SNORD14B-201ENST00000364533 90 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 RNU6-72P-201ENST00000384285 79 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 SNORA11.4-201ENST00000408823 129 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 MTND2P18-201ENST00000419962 1030 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 RBBP4P6-201ENST00000508098 202 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 RNU6-685P-201ENST00000517088 95 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 CR383656.8-201ENST00000549046 145 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 MIR4298-201ENST00000584380 73 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 RPS15AP11-201ENST00000594193 385 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AL138963.2-201ENST00000605137 226 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AC009233.1-201ENST00000616477 371 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 U4atac.1-201ENST00000618345 95 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 MIR5739-201ENST00000619803 80 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AL160394.1-201ENST00000624765 724 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 AP003400.5-201ENST00000624827 617 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 MIR3529-201ENST00000637713 78 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
ZNF560Q96MR9 MTND5P17-201ENST00000418405 1603 ntBASIC2.35□□□□□ -2.03
ZNF560Q96MR9 HAUS6P2-201ENST00000433254 2404 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 RNU6-942P-201ENST00000363002 107 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 RNY3P10-201ENST00000384764 102 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MIR578-201ENST00000384828 96 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AF274854.1-201ENST00000413236 615 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MTND3P17-201ENST00000416968 344 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 NPM1P11-201ENST00000417106 855 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 CALM2P2-201ENST00000428512 440 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC016691.1-201ENST00000441321 413 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC079781.2-201ENST00000446424 169 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 SNRPGP9-201ENST00000456025 225 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MED28P2-201ENST00000475771 317 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms