Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR548I1-201ENST00000408810 149 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AC002075.2-201ENST00000425207 252 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 AL353997.1-201ENST00000432936 108 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 RPS29P31-201ENST00000446147 164 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A3Q01955 S100A11P2-201ENST00000467589 312 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 RN7SL594P-201ENST00000470590 287 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 AC109925.1-201ENST00000478069 331 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A3Q01955 YWHAEP4-201ENST00000505390 198 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 FCF1P8-201ENST00000510322 597 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 Y_RNA.680-201ENST00000516441 93 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AC006600.1-201ENST00000572529 153 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MIR4524B-201ENST00000581569 115 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MIR7851-201ENST00000610611 160 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A3Q01955 AP001005.3-201ENST00000622049 129 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 U6.104-201ENST00000637979 90 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A3Q01955 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A3Q01955 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A3Q01955 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL4A3Q01955 AC000123.3-201ENST00000624029 4975 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A3Q01955 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.5□□□□□ -1.85
COL4A3Q01955 Y_RNA.64-201ENST00000362845 102 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 SNORA20.1-201ENST00000364790 130 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 Y_RNA.376-201ENST00000365638 108 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU6-933P-201ENST00000384424 107 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 MIR153-1-201ENST00000384914 90 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU2-64P-201ENST00000411315 191 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AL353621.1-201ENST00000418219 243 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A3Q01955 AL133396.1-201ENST00000432048 687 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A3Q01955 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A3Q01955 AL136097.1-201ENST00000456945 913 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU6-1037P-201ENST00000459571 107 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 SNORD116-26-201ENST00000516006 96 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A3Q01955 CBX3P8-201ENST00000532412 525 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 VN1R91P-201ENST00000594377 169 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC073657.2-201ENST00000605661 303 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A3Q01955 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A3Q01955 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
COL4A3Q01955 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A3Q01955 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A3Q01955 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU4-44P-201ENST00000363050 141 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 Y_RNA.461-201ENST00000384263 103 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 SNORA44-201ENST00000384584 132 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU6-1179P-201ENST00000384667 107 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU6-837P-201ENST00000391056 108 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 LAP3P1-201ENST00000403648 294 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC003685.2-201ENST00000422795 395 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RPL23AP82-202ENST00000427528 469 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 ARL5AP4-201ENST00000430731 512 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 MTND2P29-201ENST00000438595 412 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 DAP3P1-201ENST00000441522 278 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AL360271.2-201ENST00000447710 161 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.49□□□□□ -1.85
COL4A3Q01955 CENPBD1P1-201ENST00000464061 469 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 RPS20P22-201ENST00000473700 357 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A3Q01955 RNU7-4P-201ENST00000516961 62 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 IGKV2D-23-201ENST00000518179 286 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A3Q01955 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A3Q01955 HSPE1P20-201ENST00000538133 289 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AL161713.1-201ENST00000555538 145 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A3Q01955 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A3Q01955 LRRC37A5P-203ENST00000580181 585 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 MIR548AC-201ENST00000585049 88 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 BRDTP1-201ENST00000605735 677 ntBASIC3.49□□□□□ -1.85
COL4A3Q01955 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A3Q01955 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A3Q01955 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.48□□□□□ -1.85
COL4A3Q01955 MTND5P6-201ENST00000422338 1798 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
COL4A3Q01955 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.48□□□□□ -1.85
COL4A3Q01955 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 Y_RNA.14-201ENST00000362415 103 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 RNY3P11-201ENST00000364153 102 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 Y_RNA.526-201ENST00000384572 110 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 Y_RNA.534-201ENST00000384599 112 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 CYCSP33-201ENST00000414485 327 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 SUMO1P3-201ENST00000439961 304 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 FO393415.2-201ENST00000480085 343 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 AC008716.1-201ENST00000511084 513 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 AC023141.12-201ENST00000512399 199 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms