Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR8076-201ENST00000611401 83 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 AC027309.3-201ENST00000623419 351 ntBASIC3.11□□□□□ -1.91
HOXA4Q00056 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA4Q00056 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA4Q00056 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA4Q00056 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RNU6-78P-201ENST00000362897 107 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 SNORD50.1-201ENST00000362987 71 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RNU6-884P-201ENST00000363889 107 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RNU6-336P-201ENST00000364891 107 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR554-201ENST00000384874 96 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HOXA4Q00056 RNU6-823P-201ENST00000391042 103 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 AL138885.1-201ENST00000405921 675 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RPL23AP48-201ENST00000406913 488 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 SNORA11-201ENST00000408789 128 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 SNORA57.3-201ENST00000411095 141 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA4Q00056 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA4Q00056 AL035423.1-201ENST00000420331 213 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA4Q00056 RPS29P27-201ENST00000463711 170 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RPL21P104-201ENST00000464143 478 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA4Q00056 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA4Q00056 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA4Q00056 AC104619.4-201ENST00000510773 249 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 RNU6-928P-201ENST00000516876 104 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 IGKV2D-19-201ENST00000523346 262 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXA4Q00056 HSBP1P1-201ENST00000555205 166 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR5696-201ENST00000578474 85 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR3922-201ENST00000585192 84 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 HMGB1P50-201ENST00000605814 607 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR486-1-201ENST00000612171 68 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR1244-1-201ENST00000612829 85 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA4Q00056 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA4Q00056 CR392039.5-201ENST00000623201 510 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR1244-3-201ENST00000635744 85 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR1244-2-201ENST00000636449 85 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 MIR1244-4-202ENST00000636813 85 ntBASIC3.1□□□□□ -1.91
HOXA4Q00056 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA4Q00056 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA4Q00056 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXA4Q00056 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HOXA4Q00056 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA4Q00056 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA4Q00056 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXA4Q00056 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXA4Q00056 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA4Q00056 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA4Q00056 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA4Q00056 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HOXA4Q00056 RNU6-898P-201ENST00000365627 104 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 MIR518D-201ENST00000385014 87 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 RNA5SP424-201ENST00000390988 115 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA4Q00056 AC017079.2-201ENST00000416102 485 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA4Q00056 DPH3P2-201ENST00000422618 250 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA4Q00056 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA4Q00056 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXA4Q00056 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 AC112492.4-201ENST00000456549 352 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA4Q00056 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA4Q00056 MIR5188-201ENST00000583467 113 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 MIR3149-201ENST00000584629 83 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 AC138305.3-201ENST00000624988 240 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 MIR4272-201ENST00000635924 64 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 MTND5P9-201ENST00000503854 1755 ntBASIC3.09□□□□□ -1.91
HOXA4Q00056 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.09□□□□□ -1.92
HOXA4Q00056 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXA4Q00056 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXA4Q00056 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU6-238P-201ENST00000363313 106 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU6-595P-201ENST00000363944 107 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU6-270P-201ENST00000364131 105 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU4-42P-201ENST00000364738 142 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU1-73P-201ENST00000383971 164 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 Y_RNA.424-201ENST00000384063 103 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 HMGN2P8-201ENST00000391458 268 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RPL21P17-201ENST00000397467 475 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 U3.37-201ENST00000408528 213 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 RNU6-101P-201ENST00000410323 104 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA4Q00056 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA4Q00056 OR2AQ1P-201ENST00000451972 200 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 MTATP6P7-201ENST00000453315 681 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 HMGN2P16-201ENST00000456802 261 ntBASIC3.08□□□□□ -1.92
HOXA4Q00056 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms