Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARF4P1-201ENST00000605447 541 ntBASIC3.99□□□□□ -1.77
RNF4P78317 BRDTP1-201ENST00000605735 677 ntBASIC3.99□□□□□ -1.77
RNF4P78317 AL138721.1-201ENST00000616756 179 ntBASIC3.99□□□□□ -1.77
RNF4P78317 MIR3653-201ENST00000625572 110 ntBASIC3.99□□□□□ -1.77
RNF4P78317 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 MAPK10-372ENST00000641954 3413 ntBASIC3.98□□□□□ -1.77
RNF4P78317 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.98□□□□□ -1.77
RNF4P78317 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.98□□□□□ -1.77
RNF4P78317 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
RNF4P78317 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
RNF4P78317 SNORD56.1-201ENST00000362913 68 ntBASIC3.98□□□□□ -1.77
RNF4P78317 Y_RNA.277-201ENST00000364754 102 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU1-100P-201ENST00000365255 165 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC068538.1-201ENST00000376856 336 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU6-1286P-201ENST00000383871 107 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU6-17P-201ENST00000384245 107 ntBASIC3.98□□□□□ -1.77
RNF4P78317 Y_RNA.462-201ENST00000384268 102 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU6-843P-201ENST00000384454 104 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU6-102P-201ENST00000384485 104 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNU6-18P-201ENST00000384527 107 ntBASIC3.98□□□□□ -1.77
RNF4P78317 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
RNF4P78317 RNA5SP372-201ENST00000390836 115 ntBASIC3.98□□□□□ -1.77
RNF4P78317 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.98□□□□□ -1.77
RNF4P78317 AL353748.1-201ENST00000440753 474 ntBASIC3.98□□□□□ -1.77
RNF4P78317 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.98□□□□□ -1.77
RNF4P78317 RPL23AP81-201ENST00000455252 467 ntBASIC3.98□□□□□ -1.77
RNF4P78317 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.98□□□□□ -1.77
RNF4P78317 UQCRHP4-201ENST00000471686 272 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RN7SL860P-201ENST00000473738 223 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC105137.1-201ENST00000484355 562 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.98□□□□□ -1.77
RNF4P78317 BTF3L4P4-201ENST00000506381 449 ntBASIC3.98□□□□□ -1.77
RNF4P78317 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.98□□□□□ -1.77
RNF4P78317 SNORA70.14-201ENST00000516205 110 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNA5SP49-201ENST00000516450 115 ntBASIC3.98□□□□□ -1.77
RNF4P78317 RNA5SP73-201ENST00000516744 108 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC022080.3-201ENST00000544433 482 ntBASIC3.98□□□□□ -1.77
RNF4P78317 TVP23BP1-201ENST00000557500 617 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC130289.1-201ENST00000577321 73 ntBASIC3.98□□□□□ -1.77
RNF4P78317 AC009779.6-201ENST00000603972 165 ntBASIC3.98□□□□□ -1.77
RNF4P78317 MIR6716-201ENST00000613413 80 ntBASIC3.98□□□□□ -1.77
RNF4P78317 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
RNF4P78317 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
RNF4P78317 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.97□□□□□ -1.77
RNF4P78317 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
RNF4P78317 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
RNF4P78317 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.97□□□□□ -1.77
RNF4P78317 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 RNU6-858P-201ENST00000362436 107 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNU1-14P-201ENST00000362759 152 ntBASIC3.97□□□□□ -1.77
RNF4P78317 SNORD81.1-201ENST00000363064 77 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNU6-879P-201ENST00000364328 108 ntBASIC3.97□□□□□ -1.77
RNF4P78317 Y_RNA.352-201ENST00000365439 102 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNA5SP167-201ENST00000365461 116 ntBASIC3.97□□□□□ -1.77
RNF4P78317 Y_RNA.581-201ENST00000391017 97 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNU4-61P-201ENST00000411243 107 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNU2-71P-201ENST00000411395 189 ntBASIC3.97□□□□□ -1.77
RNF4P78317 CRYBB2P1-203ENST00000415709 538 ntBASIC3.97□□□□□ -1.77
RNF4P78317 PIGPP3-201ENST00000425307 415 ntBASIC3.97□□□□□ -1.77
RNF4P78317 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 NUTF2P3-201ENST00000448540 384 ntBASIC3.97□□□□□ -1.77
RNF4P78317 HMGB3P8-201ENST00000449709 577 ntBASIC3.97□□□□□ -1.77
RNF4P78317 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.97□□□□□ -1.77
RNF4P78317 AC087477.1-201ENST00000465747 340 ntBASIC3.97□□□□□ -1.77
RNF4P78317 AP000870.1-201ENST00000472927 406 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RPS29P20-201ENST00000489592 171 ntBASIC3.97□□□□□ -1.77
RNF4P78317 SNORA31.6-201ENST00000516241 130 ntBASIC3.97□□□□□ -1.77
RNF4P78317 RNA5SP519-201ENST00000516480 119 ntBASIC3.97□□□□□ -1.77
RNF4P78317 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.97□□□□□ -1.77
RNF4P78317 AC098479.1-201ENST00000609225 154 ntBASIC3.97□□□□□ -1.77
RNF4P78317 FAM27D1-201ENST00000612308 341 ntBASIC3.97□□□□□ -1.77
RNF4P78317 AL445567.2-201ENST00000618935 498 ntBASIC3.97□□□□□ -1.77
RNF4P78317 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
RNF4P78317 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.97□□□□□ -1.77
RNF4P78317 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
RNF4P78317 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
RNF4P78317 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.96□□□□□ -1.77
RNF4P78317 SRP72P2-201ENST00000344851 1979 ntBASIC3.96□□□□□ -1.77
RNF4P78317 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
RNF4P78317 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
RNF4P78317 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.96□□□□□ -1.78
RNF4P78317 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.96□□□□□ -1.78
RNF4P78317 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
RNF4P78317 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
RNF4P78317 MIR383-201ENST00000362257 73 ntBASIC3.96□□□□□ -1.78
RNF4P78317 RNU6-1266P-201ENST00000362794 105 ntBASIC3.96□□□□□ -1.78
RNF4P78317 SNORD113-8-201ENST00000363497 74 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms