Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.18□□□□□ -2.38
HMGA1P17096 GDI2P1-201ENST00000429312 1336 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 RNU6-730P-201ENST00000383954 104 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 RNU6-217P-201ENST00000384164 104 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 RNU6-110P-201ENST00000384508 104 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 RNA5SP299-201ENST00000391203 116 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AC114482.1-201ENST00000418010 247 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.17□□□□□ -2.38
HMGA1P17096 EIF1P1-201ENST00000421436 341 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.17□□□□□ -2.38
HMGA1P17096 AC004865.1-201ENST00000442276 1003 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.17□□□□□ -2.38
HMGA1P17096 AL358794.1-201ENST00000445689 381 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AC104629.2-201ENST00000468627 598 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 SNORA62.5-201ENST00000516634 120 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 AC067904.2-201ENST00000517322 1283 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.17□□□□□ -2.38
HMGA1P17096 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.17□□□□□ -2.38
HMGA1P17096 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.17□□□□□ -2.38
HMGA1P17096 AC018618.2-201ENST00000604770 446 ntBASIC0.17□□□□□ -2.38
HMGA1P17096 SNORD114-24-201ENST00000365029 72 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGA1P17096 HMGB1P17-201ENST00000403495 628 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 RPS3AP1-201ENST00000413190 320 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGA1P17096 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGA1P17096 MTCO2P12-201ENST00000427426 682 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 RPL21P47-201ENST00000483696 477 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AC010409.1-201ENST00000487382 476 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGA1P17096 RNA5SP134-201ENST00000516492 96 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AC022616.2-201ENST00000523185 300 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 EEF1B2P4-201ENST00000551398 348 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 SNORA77B-201ENST00000578179 125 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.16□□□□□ -2.38
HMGA1P17096 AL022067.1-201ENST00000602426 454 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AP000860.1-201ENST00000605250 559 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AC017083.3-201ENST00000609955 700 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AC104465.1-201ENST00000611365 139 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGA1P17096 AL138726.1-201ENST00000614873 333 ntBASIC0.16□□□□□ -2.38
HMGA1P17096 RNU6-31P-201ENST00000384388 108 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 RNA5SP63-201ENST00000391225 112 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AL139098.1-201ENST00000407291 389 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC018630.2-202ENST00000422992 927 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.15□□□□□ -2.39
HMGA1P17096 AP001324.2-201ENST00000461163 319 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 BOLA3P3-201ENST00000505182 232 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
HMGA1P17096 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
HMGA1P17096 RNU6-667P-201ENST00000517186 102 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 COPS8P3-201ENST00000526024 482 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 APOOP3-201ENST00000536787 586 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC018659.1-201ENST00000551083 169 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.15□□□□□ -2.39
HMGA1P17096 RPL30P11-203ENST00000598995 310 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.15□□□□□ -2.39
HMGA1P17096 AL022345.1-201ENST00000607292 135 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC092953.2-201ENST00000608000 699 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC096772.1-201ENST00000609146 564 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.15□□□□□ -2.39
HMGA1P17096 AC018926.3-201ENST00000618841 406 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 AC091965.5-201ENST00000624785 342 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.15□□□□□ -2.39
HMGA1P17096 AC073544.1-201ENST00000600110 1595 ntBASIC0.15□□□□□ -2.39
HMGA1P17096 RNU1-96P-201ENST00000364163 162 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AL355615.1-201ENST00000406187 641 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 MIR1262-201ENST00000408276 93 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.14□□□□□ -2.39
HMGA1P17096 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.14□□□□□ -2.39
HMGA1P17096 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.14□□□□□ -2.39
HMGA1P17096 AC013267.1-201ENST00000458227 267 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.14□□□□□ -2.39
HMGA1P17096 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.14□□□□□ -2.39
HMGA1P17096 MIR449C-201ENST00000516047 92 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.14□□□□□ -2.39
HMGA1P17096 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.14□□□□□ -2.39
HMGA1P17096 AC009268.1-201ENST00000561352 1203 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AC091489.2-201ENST00000566263 604 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AC015688.2-201ENST00000584523 262 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 MZT1P2-201ENST00000604387 248 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 ELOCP5-201ENST00000604924 333 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AP005229.2-201ENST00000609980 697 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AC009950.2-201ENST00000636548 183 ntBASIC0.14□□□□□ -2.39
HMGA1P17096 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
HMGA1P17096 SNORA48.1-201ENST00000390879 135 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 MIR888-201ENST00000401186 77 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 SSR1P1-201ENST00000407630 814 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 AC010099.3-201ENST00000423896 409 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 Z82210.1-201ENST00000440037 231 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 VPS26AP1-201ENST00000483197 979 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 HMGN1P13-201ENST00000505795 138 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 RNU6-27P-201ENST00000516146 107 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 RN7SKP88-201ENST00000516847 250 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.13□□□□□ -2.39
HMGA1P17096 AC005261.5-201ENST00000596280 355 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 DUXAP11-201ENST00000603858 526 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 7SK.8-201ENST00000612110 250 ntBASIC0.13□□□□□ -2.39
HMGA1P17096 7SK.11-201ENST00000615477 250 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms