Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXD4P09016 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXD4P09016 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD4P09016 RPL23AP78-201ENST00000599928 470 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC174048.1-201ENST00000603389 144 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD4P09016 AC022893.3-201ENST00000607665 437 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC004852.3-201ENST00000614131 326 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC034102.8-201ENST00000615146 484 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD4P09016 AC073308.1-201ENST00000623696 305 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC092608.2-201ENST00000624427 218 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 AC024614.3-201ENST00000637860 256 ntBASIC2.48□□□□□ -2.01
HOXD4P09016 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
HOXD4P09016 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD4P09016 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXD4P09016 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 ZNF519P1-201ENST00000449011 1626 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC103710.2-202ENST00000641454 2853 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 UBE2L2-201ENST00000254302 429 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXD4P09016 MIR592-201ENST00000384959 97 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 MIR34A-201ENST00000385130 110 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 RNU2-29P-201ENST00000410423 189 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 RNU6-387P-201ENST00000411331 105 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 RPS12P24-201ENST00000412619 387 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 OR6C66P-201ENST00000414917 930 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 SNRPEP10-201ENST00000420249 274 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC007919.1-201ENST00000429380 217 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 SUMO1P4-201ENST00000429430 302 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD4P09016 ARL5AP4-201ENST00000430731 512 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 Z82210.1-201ENST00000440037 231 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD4P09016 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.47□□□□□ -2.01
HOXD4P09016 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD4P09016 snoU13.28-201ENST00000459235 104 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC087588.1-201ENST00000462203 316 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 PRDX4P1-201ENST00000507189 574 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD4P09016 RANP3-201ENST00000530970 276 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 ADI1P3-201ENST00000549509 470 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 TRAV28-201ENST00000557548 323 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AC098826.3-201ENST00000603823 466 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 AL359547.2-201ENST00000615810 418 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD4P09016 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.47□□□□□ -2.01
HOXD4P09016 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXD4P09016 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD4P09016 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 NACAP2-201ENST00000318548 624 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNA5SP432-201ENST00000362480 116 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-1167P-201ENST00000363227 94 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-270P-201ENST00000364131 105 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-512P-201ENST00000364438 103 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU4-20P-201ENST00000365601 151 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 DEFA7P-201ENST00000382676 285 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-116P-201ENST00000384042 109 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MIR325-201ENST00000385260 98 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 SNORD37.1-201ENST00000390968 65 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 CISD1P1-201ENST00000393907 327 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXD4P09016 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXD4P09016 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXD4P09016 AC092047.1-201ENST00000424997 240 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AL592045.1-201ENST00000429867 352 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXD4P09016 AL121890.1-201ENST00000435457 205 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MTATP6P23-201ENST00000440153 476 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 PIGFP3-201ENST00000441918 722 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AL513328.1-201ENST00000446460 224 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MTND4P18-201ENST00000447010 465 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 RNU7-180P-201ENST00000459240 63 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXD4P09016 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 MTCO3P9-201ENST00000506989 781 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-358P-201ENST00000516564 75 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNU6-914P-201ENST00000516749 109 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 RNA5SP291-201ENST00000517222 105 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXD4P09016 AL138976.2-201ENST00000563989 694 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MIR5583-1-201ENST00000580941 59 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MIR3605-201ENST00000583214 100 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 ZNF861P-201ENST00000588126 639 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AC010525.2-201ENST00000590920 195 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AL161798.1-201ENST00000604630 131 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AL670379.4-201ENST00000605279 254 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms