Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNA5SP282-201ENST00000516355 108 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.24□□□□□ -1.89
NPHP1O15259 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.24□□□□□ -1.89
NPHP1O15259 MIR5692A1-201ENST00000580523 69 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 MIR3611-201ENST00000584484 83 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NPHP1O15259 NBR2-204ENST00000587322 63 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.24□□□□□ -1.89
NPHP1O15259 AC005046.1-201ENST00000608515 625 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AC092656.1-203ENST00000624134 423 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NPHP1O15259 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP1O15259 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP1O15259 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP1O15259 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.23□□□□□ -1.89
NPHP1O15259 RNU6-72P-201ENST00000384285 79 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RNU6-606P-201ENST00000384721 111 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 MIR218-1-201ENST00000384999 110 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 MIR27B-201ENST00000385129 97 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP1O15259 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP1O15259 AL590004.2-201ENST00000404787 371 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 SNORD88.1-201ENST00000408684 91 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RNA5SP425-201ENST00000410336 112 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RN7SKP192-201ENST00000411291 327 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL135786.1-201ENST00000415892 214 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL451074.5-201ENST00000415894 435 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL353621.1-201ENST00000418219 243 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.23□□□□□ -1.89
NPHP1O15259 RPL9P33-201ENST00000484311 566 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 MRPL42P6-201ENST00000486397 371 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AC011005.2-201ENST00000487324 359 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RNU1-86P-201ENST00000516108 154 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RNU1-107P-201ENST00000516617 154 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP1O15259 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP1O15259 AC135279.1-201ENST00000543493 504 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.23□□□□□ -1.89
NPHP1O15259 AC073539.2-201ENST00000597113 165 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AC025449.1-201ENST00000603896 529 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL670379.10-201ENST00000604330 253 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 BNIP3P10-201ENST00000605360 577 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL670379.9-201ENST00000605428 253 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 AL021997.1-201ENST00000605757 193 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.23□□□□□ -1.89
NPHP1O15259 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.22□□□□□ -1.89
NPHP1O15259 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP1O15259 Y_RNA.51-201ENST00000362725 102 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 VTRNA1-1-201ENST00000363120 99 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 Y_RNA.159-201ENST00000363674 87 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 RNU6-1119P-201ENST00000384349 108 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 RPL30P4-201ENST00000429309 333 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.22□□□□□ -1.89
NPHP1O15259 snoU109.2-201ENST00000459316 135 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 AC090096.1-201ENST00000489168 390 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 RPS29P21-201ENST00000496272 170 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 AC093534.1-201ENST00000504977 132 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 RNU6-237P-201ENST00000515985 71 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
NPHP1O15259 MIR4703-201ENST00000577728 79 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP1O15259 AC245008.1-201ENST00000608123 476 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.22□□□□□ -1.89
NPHP1O15259 AC092447.7-201ENST00000422212 1621 ntBASIC3.22□□□□□ -1.89
NPHP1O15259 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP1O15259 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP1O15259 RNU6-942P-201ENST00000363002 107 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 RNU2-9P-201ENST00000410194 145 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 MTATP6P18-201ENST00000417994 673 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 USP9YP20-201ENST00000419224 558 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.21□□□□□ -1.9
NPHP1O15259 RPL39P40-201ENST00000445481 146 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 MTND1P29-201ENST00000448112 647 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 HMGB1P30-201ENST00000492455 606 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 RN7SL636P-201ENST00000497504 294 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 MTND3P25-201ENST00000509243 135 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.21□□□□□ -1.9
NPHP1O15259 RNA5SP112-201ENST00000515937 99 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC109329.2-201ENST00000519658 482 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AP004607.1-201ENST00000524456 203 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC010186.2-204ENST00000537668 439 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.21□□□□□ -1.9
NPHP1O15259 AL158827.2-201ENST00000602494 330 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AC008945.2-201ENST00000606056 604 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 RMST_4.1-201ENST00000616886 107 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.21□□□□□ -1.9
NPHP1O15259 uc_338.11-201ENST00000619132 160 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 AL691447.3-201ENST00000635020 330 ntBASIC3.21□□□□□ -1.9
NPHP1O15259 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPHP1O15259 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NPHP1O15259 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
NPHP1O15259 RNU6-1120P-201ENST00000362988 108 ntBASIC3.2□□□□□ -1.9
NPHP1O15259 RNU6-486P-201ENST00000363116 107 ntBASIC3.2□□□□□ -1.9
NPHP1O15259 RNU6-1103P-201ENST00000384150 107 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms