Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC093831.2-201ENST00000624393 3427 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.67-201ENST00000362870 100 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 SNORA48.7-201ENST00000391302 135 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 MIR888-201ENST00000401186 77 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 MIR548F5-201ENST00000408421 86 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AL592148.1-201ENST00000413568 445 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RPL26P27-201ENST00000414397 437 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC245054.2-201ENST00000415639 319 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC007560.1-201ENST00000426912 237 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AL353705.1-201ENST00000433468 480 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AL590664.1-201ENST00000448065 339 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 UQCRHP3-201ENST00000451503 251 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AL583843.1-201ENST00000456070 346 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RN7SL75P-201ENST00000461926 281 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AP002884.2-201ENST00000471647 395 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RPL32P34-201ENST00000486380 400 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RPS27P27-201ENST00000498779 255 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RN7SKP24-201ENST00000515888 284 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-703P-201ENST00000516946 107 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 MIR3609-201ENST00000582661 80 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 POLR3GP2-201ENST00000588366 668 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AP000787.2-201ENST00000604432 568 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 NUTF2P8-201ENST00000604593 363 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 AC006026.1-201ENST00000444025 1803 ntBASIC3.7□□□□□ -1.82
LIMCH1Q9UPQ0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 SNORD14B-201ENST00000364533 90 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-593P-201ENST00000364716 112 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1297P-201ENST00000384415 104 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 MIR200C-201ENST00000384980 68 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 MIR591-201ENST00000385290 95 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AL096701.2-201ENST00000416920 238 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 HMGN2P30-201ENST00000423237 256 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 HMGB1P9-201ENST00000429856 646 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC097713.2-201ENST00000430199 356 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AL645568.3-201ENST00000433683 316 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 FABP5P14-201ENST00000437273 393 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 CYCSP35-201ENST00000451978 304 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 RPL12P25-201ENST00000455592 494 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC092798.1-201ENST00000458542 409 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC096745.1-201ENST00000509945 370 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AP005639.2-201ENST00000527592 928 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC025423.5-201ENST00000550230 219 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 IMMP1LP2-201ENST00000552954 492 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 MIR4782-201ENST00000577987 79 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AL353621.2-201ENST00000605340 133 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AL442067.2-201ENST00000614033 363 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC006133.1-201ENST00000617106 264 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 U6.99-201ENST00000637524 83 ntBASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.69□□□□□ -1.82
LIMCH1Q9UPQ0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 SNORD3E-201ENST00000362899 217 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-384P-201ENST00000364900 104 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-166P-201ENST00000384371 107 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.482-201ENST00000384377 111 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1011P-201ENST00000384668 107 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 MIR23B-201ENST00000384832 97 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AL357075.1-201ENST00000404107 726 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-293P-201ENST00000411259 106 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 ATG3P1-201ENST00000419507 911 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 MTCO2P27-201ENST00000420740 428 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 MTND1P14-201ENST00000427400 950 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AL159987.2-201ENST00000432754 307 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RPS3AP52-201ENST00000435639 297 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RPL37P4-201ENST00000448908 268 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.632-201ENST00000459189 102 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC104472.2-201ENST00000469035 601 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-559P-201ENST00000516151 98 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AL670379.10-201ENST00000604330 253 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AL670379.9-201ENST00000605428 253 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC016727.1-205ENST00000605437 569 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AL050343.2-201ENST00000607338 280 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms