Protein–RNA interactions for Protein: Q9UKI2

CDC42EP3, Cdc42 effector protein 3, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3Q9UKI2 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDC42EP3Q9UKI2 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC106871.1-201ENST00000568324 3102 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 LINC02471-203ENST00000641941 4752 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 Y_RNA.27-201ENST00000362540 103 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 RNU1-76P-201ENST00000362903 159 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 RNA5SP22-201ENST00000365393 109 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6-708P-201ENST00000384217 107 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 Y_RNA.471-201ENST00000384312 102 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 MIR628-201ENST00000385229 95 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 MIR493-201ENST00000385254 89 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 RNU6-130P-201ENST00000411112 103 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AL356095.1-201ENST00000417217 199 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC098831.1-201ENST00000440661 216 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 LINC01399-202ENST00000458450 244 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 SNORA43.2-201ENST00000516652 128 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 SNORA40.15-201ENST00000516884 107 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 CASP1P1-201ENST00000526345 212 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 LINC00933-203ENST00000559812 219 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AMZ2P1-203ENST00000565833 850 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 U6.104-201ENST00000637979 90 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 AC007656.2-201ENST00000624902 4547 ntBASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CDC42EP3Q9UKI2 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.59□□□□□ -1.84
CDC42EP3Q9UKI2 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.59□□□□□ -1.84
CDC42EP3Q9UKI2 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CDC42EP3Q9UKI2 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CDC42EP3Q9UKI2 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.59□□□□□ -1.84
CDC42EP3Q9UKI2 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL161912.2-201ENST00000565707 3007 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.14-201ENST00000362415 103 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RNU6-600P-201ENST00000362524 99 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RNU6-942P-201ENST00000363002 107 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.123-201ENST00000363338 102 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.405-201ENST00000383979 100 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.451-201ENST00000384200 100 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.524-201ENST00000384564 100 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.552-201ENST00000384665 112 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.561-201ENST00000384694 100 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 MIR7-3-201ENST00000384898 110 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 MIR449B-201ENST00000384995 97 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 MIR513A2-201ENST00000385249 127 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL138878.1-201ENST00000405131 347 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 MTCO3P29-201ENST00000432119 779 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL512844.2-201ENST00000433990 593 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RPL7P49-201ENST00000471402 708 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RNU6-1023P-201ENST00000516137 106 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RNU6-397P-201ENST00000516226 104 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 RNA5SP468-201ENST00000516782 93 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 HSPE1P20-201ENST00000538133 289 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL442163.3-201ENST00000554110 156 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC020914.4-201ENST00000597690 277 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 BPIFA4P-203ENST00000603168 689 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AC078938.1-201ENST00000620993 318 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 Z75746.1-201ENST00000440243 2080 ntBASIC3.58□□□□□ -1.84
CDC42EP3Q9UKI2 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 SRP72P2-201ENST00000344851 1979 ntBASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.105-201ENST00000363182 111 ntBASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 Y_RNA.458-201ENST00000384240 102 ntBASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 MIR483-201ENST00000385070 76 ntBASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CDC42EP3Q9UKI2 RNA5SP239-201ENST00000410218 129 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms