Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC022616.8-201ENST00000533569 253 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC123904.2-201ENST00000548059 300 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC008269.2-201ENST00000561915 1105 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC016925.2-201ENST00000605108 242 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AL158042.1-201ENST00000605338 460 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 uc_338.12-201ENST00000616344 181 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 FARSBP1-201ENST00000435808 1778 ntBASIC1.48□□□□□ -2.17
VCX3AQ9NNX9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 RNU1-58P-201ENST00000362413 163 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 RNU6-655P-201ENST00000362858 107 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 U3.12-201ENST00000364498 214 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 RNU6-190P-201ENST00000384154 102 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 RNU6-1242P-201ENST00000391052 103 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AL079342.1-201ENST00000401460 267 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 Y_RNA.623-201ENST00000411128 95 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AL135786.1-201ENST00000415892 214 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC012308.1-201ENST00000451232 178 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 RPL23AP35-201ENST00000451906 501 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 HMGB1P30-201ENST00000492455 606 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC012065.4-201ENST00000602445 679 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AL391001.1-201ENST00000602747 715 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC096577.2-201ENST00000611455 153 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC024940.5-201ENST00000622889 474 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 MTND4P16-201ENST00000466108 1367 ntBASIC1.47□□□□□ -2.17
VCX3AQ9NNX9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU6-743P-201ENST00000364151 106 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU6-487P-201ENST00000365430 104 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNA5SP88-201ENST00000365560 109 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU6-72P-201ENST00000384285 79 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 SNORA67.3-201ENST00000384366 140 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 MIR934-201ENST00000401241 83 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 MIR1294-201ENST00000408503 142 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU6-757P-201ENST00000410334 100 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU2-2P-201ENST00000410396 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU2-62P-201ENST00000410868 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 SDAD1P3-201ENST00000427380 333 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC006946.1-201ENST00000429106 328 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 VN1R108P-201ENST00000431580 830 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 CALM1P1-201ENST00000442082 433 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC118469.1-201ENST00000442943 488 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC245102.2-201ENST00000448956 180 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC098862.1-201ENST00000504991 413 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 TPT1P8-201ENST00000510120 555 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 CR383656.8-201ENST00000549046 145 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 YWHAZP1-201ENST00000556286 722 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 MIR4429-201ENST00000580105 73 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 BNIP3P31-201ENST00000604515 566 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.15-201ENST00000611544 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.16-201ENST00000613119 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.12-201ENST00000613778 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.20-201ENST00000613956 192 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.9-201ENST00000615427 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.11-201ENST00000616345 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.2-201ENST00000616535 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.3-201ENST00000617785 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC006338.1-201ENST00000618453 749 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.19-201ENST00000618602 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 RNU2-1-201ENST00000618664 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.6-201ENST00000619225 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.5-201ENST00000619465 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U2.10-201ENST00000620268 191 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 U1.36-201ENST00000620684 176 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 AC093648.1-201ENST00000623546 606 ntBASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC1.46□□□□□ -2.18
VCX3AQ9NNX9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.45□□□□□ -2.18
VCX3AQ9NNX9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.45□□□□□ -2.18
VCX3AQ9NNX9 ZNF876P-202ENST00000398732 1485 ntBASIC1.45□□□□□ -2.18
VCX3AQ9NNX9 HAUS6P2-201ENST00000433254 2404 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms