Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC097655.1-201ENST00000635075 318 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 MIR6767-201ENST00000637302 66 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 CDC27P3-201ENST00000635418 1910 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
USP42Q9H9J4 Y_RNA.354-201ENST00000365448 111 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 RPS12P24-201ENST00000412619 387 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 SNORD56-201ENST00000413522 71 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 FABP5P15-201ENST00000453566 214 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 RNA5SP57-201ENST00000459463 123 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AC116655.1-201ENST00000508324 901 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 RNU6-1183P-201ENST00000517054 60 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 ACA59.2-201ENST00000517061 156 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 RN7SKP258-201ENST00000517151 304 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 LRRC6P1-201ENST00000532188 885 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AC016957.1-201ENST00000534895 309 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AL136520.1-202ENST00000555494 763 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AL133153.1-201ENST00000557756 303 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AC026271.5-201ENST00000577873 130 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 AL109918.3-201ENST00000603072 338 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AC090186.1-201ENST00000605991 572 ntBASIC1.65□□□□□ -2.15
USP42Q9H9J4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.65□□□□□ -2.15
USP42Q9H9J4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 AL390862.1-201ENST00000635467 1469 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 SNORD114-27-201ENST00000363766 70 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 RNU6-203P-201ENST00000384038 104 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 RNU6-1032P-201ENST00000384100 107 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 MIR520E-201ENST00000384867 87 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 MIR518A2-201ENST00000384966 87 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 USP9YP21-201ENST00000420603 432 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 PGBD4P6-201ENST00000421501 610 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 HMGN2P18-201ENST00000450680 270 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 AP003168.1-201ENST00000530091 307 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 AL137100.2-201ENST00000555786 315 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1.64□□□□□ -2.15
USP42Q9H9J4 AL158211.2-201ENST00000607282 395 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 AC124016.2-201ENST00000610058 665 ntBASIC1.64□□□□□ -2.15
USP42Q9H9J4 RNU1-72P-201ENST00000362976 153 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 RNU2-72P-201ENST00000411175 163 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC019070.1-201ENST00000415008 1024 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AL158823.1-201ENST00000418441 478 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 RSU1P2-202ENST00000437884 485 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 MTND4P25-201ENST00000441039 533 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC020699.1-201ENST00000505161 445 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC112198.4-201ENST00000515450 351 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 LINC00933-203ENST00000559812 219 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 MIR4782-201ENST00000577987 79 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC006270.3-201ENST00000605967 1036 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC097468.3-201ENST00000607956 456 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC092953.2-201ENST00000608000 699 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.63□□□□□ -2.15
USP42Q9H9J4 AP000676.3-201ENST00000623299 569 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 PCMTD1P7-201ENST00000634506 357 ntBASIC1.63□□□□□ -2.15
USP42Q9H9J4 RNU5E-1-201ENST00000362477 120 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL591034.2-201ENST00000402839 359 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 MIR320C1-201ENST00000408566 88 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC244636.1-201ENST00000421152 228 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL953862.1-201ENST00000423016 168 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 ISCA1P1-201ENST00000426679 387 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 snoU109.1-201ENST00000459339 135 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC018437.1-201ENST00000492214 406 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 RNU6-678P-201ENST00000516832 109 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 RNU6-143P-201ENST00000516942 93 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
USP42Q9H9J4 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC079598.5-201ENST00000547460 117 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.62□□□□□ -2.15
USP42Q9H9J4 AC087045.1-201ENST00000605856 382 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 AL133445.2-201ENST00000611191 527 ntBASIC1.62□□□□□ -2.15
USP42Q9H9J4 MIR7974-201ENST00000615835 79 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms