Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 ADAM3A-203ENST00000461344 2157 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 Y_RNA.33-201ENST00000362591 102 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RNU6-1159P-201ENST00000362933 107 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 SNORD115-7-201ENST00000365306 82 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 SNORA64-201ENST00000384674 134 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 NDUFS5P4-201ENST00000412983 318 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AL591704.1-201ENST00000432574 275 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC027673.1-201ENST00000456245 405 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RPS29P12-201ENST00000460178 152 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 SRRM1P2-201ENST00000464531 1192 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RPL23AP11-201ENST00000475260 469 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RPL23AP70-201ENST00000483361 460 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 HMGB1P29-201ENST00000505659 499 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RAC1P5-201ENST00000512182 576 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 RNU6-1315P-201ENST00000517187 99 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC025755.1-201ENST00000521306 278 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC026464.5-201ENST00000562497 722 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC010546.1-201ENST00000569391 485 ntBASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF541Q9H0D2 AC103710.2-202ENST00000641454 2853 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 ZNF680P1-201ENST00000436625 1469 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 NACAP2-201ENST00000318548 624 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 RNA5SP456-201ENST00000364002 114 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 RNU6-1029P-201ENST00000384109 107 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AL591416.1-201ENST00000404015 867 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 RPL26P27-201ENST00000414397 437 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AL160275.3-201ENST00000423876 471 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 Z98742.2-201ENST00000431564 187 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 MTND1P1-201ENST00000445453 368 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 MRPL50P4-201ENST00000446432 475 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 EIF4EP3-201ENST00000498782 656 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 SUMO2P6-201ENST00000505273 288 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 RNU6-314P-201ENST00000516574 104 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 RNU6-572P-201ENST00000516724 80 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AL359212.1-201ENST00000556608 614 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AL157871.3-201ENST00000557231 293 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 MIR5692A1-201ENST00000580523 69 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC008945.2-201ENST00000606056 604 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 AC009318.2-201ENST00000610917 651 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
ZNF541Q9H0D2 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RNU6-395P-201ENST00000365662 106 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 Y_RNA.409-201ENST00000383990 98 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 SNORD116-4-201ENST00000384733 96 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RN7SKP32-201ENST00000410167 303 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 MTCO3P30-201ENST00000426425 670 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 SAR1AP4-201ENST00000429225 591 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RNU7-63P-201ENST00000459054 62 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC082651.2-201ENST00000496833 166 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 RNA5SP76-201ENST00000516277 87 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 MIR4775-201ENST00000581168 75 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC013562.2-201ENST00000611632 603 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AL354950.2-201ENST00000617939 290 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC011155.2-201ENST00000623202 216 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC139792.3-201ENST00000623525 224 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC124864.2-201ENST00000624736 186 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 AC084035.1-201ENST00000634543 607 ntBASIC2.87□□□□□ -1.95
ZNF541Q9H0D2 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 Y_RNA.140-201ENST00000363474 103 ntBASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 RNU1-100P-201ENST00000365255 165 ntBASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 RNU6-1103P-201ENST00000384150 107 ntBASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 Y_RNA.534-201ENST00000384599 112 ntBASIC2.86□□□□□ -1.95
ZNF541Q9H0D2 RNU6-1179P-201ENST00000384667 107 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms