Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC069234.5-201ENST00000611056 416 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL359198.2-201ENST00000611836 194 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 DISC2.1-201ENST00000612827 205 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AC002064.3-201ENST00000623448 346 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AC090617.7-201ENST00000623952 126 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX3-1Q99801 OR4G1P-203ENST00000641984 1631 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
NKX3-1Q99801 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
NKX3-1Q99801 RNU6-898P-201ENST00000365627 104 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 MIR887-201ENST00000401258 79 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 RNU2-49P-201ENST00000410666 184 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 Y_RNA.615-201ENST00000410769 117 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 Y_RNA.623-201ENST00000411128 95 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC016831.2-201ENST00000417179 352 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 RPL7P10-201ENST00000417407 739 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 SAR1AP4-201ENST00000429225 591 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 RPL21P2-201ENST00000440049 481 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AL078601.1-201ENST00000444542 271 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 PRPS1P1-201ENST00000445305 876 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 RPL39P40-201ENST00000445481 146 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC087884.1-201ENST00000469738 328 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 LRRC34P2-201ENST00000514850 553 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 RNU6-581P-201ENST00000516214 105 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC106782.4-201ENST00000568264 210 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 MIR5692A1-201ENST00000580523 69 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC005261.5-201ENST00000596280 355 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 ATP5A1P2-202ENST00000616464 443 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC002553.4-201ENST00000616896 331 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 U6.42-201ENST00000618440 107 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 AC022418.1-201ENST00000624118 445 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 MIR622-201ENST00000638396 96 ntBASIC2.52□□□□□ -2.01
NKX3-1Q99801 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
NKX3-1Q99801 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
NKX3-1Q99801 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR412-201ENST00000362142 91 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU1-35P-201ENST00000362782 153 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 Y_RNA.167-201ENST00000363735 109 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 SNORD14B-201ENST00000364533 90 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU6-877P-201ENST00000383868 107 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU6-434P-201ENST00000384376 107 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR518D-201ENST00000385014 87 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR514A2-201ENST00000385131 88 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR514A3-201ENST00000385132 88 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU6-332P-201ENST00000391193 108 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AL590004.2-201ENST00000404787 371 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU6-607P-201ENST00000411283 108 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MTND1P23-201ENST00000416931 372 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RPS15AP5-201ENST00000436276 388 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RPL23AP58-201ENST00000440453 469 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 HMGN2P10-201ENST00000448085 265 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 DYNLL1P5-201ENST00000467158 270 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RPL27AP5-201ENST00000469428 449 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 TRBV1-201ENST00000476502 284 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 RAC1P5-201ENST00000512182 576 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC074344.1-201ENST00000512823 224 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC008885.1-201ENST00000514930 301 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 SNORD60.2-201ENST00000516883 86 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 AP002404.1-201ENST00000532005 451 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC078814.3-201ENST00000553036 491 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 OR11H5P-201ENST00000554039 926 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC021739.1-201ENST00000559631 174 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 LINC00933-203ENST00000559812 219 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR4782-201ENST00000577987 79 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AL355598.1-201ENST00000604169 202 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 RNU6-89P-201ENST00000606519 100 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC002044.1-201ENST00000606707 158 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC104458.1-201ENST00000608243 463 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC107871.2-201ENST00000612894 502 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AL031601.2-202ENST00000622650 282 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC006386.2-201ENST00000624491 75 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 AC012005.1-201ENST00000624575 75 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 MIR3662-201ENST00000637030 95 ntBASIC2.51□□□□□ -2.01
NKX3-1Q99801 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
NKX3-1Q99801 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.51□□□□□ -2.01
NKX3-1Q99801 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC138915.1-201ENST00000565427 1685 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 RNU6-522P-201ENST00000364497 107 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 SNORA71.1-201ENST00000364523 117 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms