Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
USP28Q96RU2 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
USP28Q96RU2 ZNF271P-202ENST00000465539 1970 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 Y_RNA.89-201ENST00000363031 102 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU6-179P-201ENST00000363350 107 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU6-1322P-201ENST00000364309 107 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU6-534P-201ENST00000364877 106 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 SNORD115-7-201ENST00000365306 82 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU6-1029P-201ENST00000384109 107 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 Y_RNA.453-201ENST00000384223 109 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 Y_RNA.576-201ENST00000384781 102 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 MIR196B-201ENST00000384852 84 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AL513331.1-201ENST00000411908 397 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 ZNF90P2-204ENST00000419323 1075 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC009414.1-201ENST00000427200 443 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.71□□□□□ -1.98
USP28Q96RU2 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 CR769767.1-201ENST00000436337 346 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 AC083798.1-201ENST00000472671 131 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RPL31P41-201ENST00000477967 372 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 RNA5SP401-201ENST00000515920 127 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU4-29P-201ENST00000515943 174 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RNU6-123P-201ENST00000516163 102 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 Y_RNA.689-201ENST00000516589 107 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC109635.3-201ENST00000529536 185 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 AL157687.1-201ENST00000554853 619 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 RPS3AP4-201ENST00000555161 764 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC068135.2-201ENST00000569293 1028 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 AC005498.1-201ENST00000592125 465 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC008945.2-201ENST00000606056 604 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC034102.8-201ENST00000615146 484 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 MIR6817-201ENST00000615588 66 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.71□□□□□ -1.98
USP28Q96RU2 YWHAEP7-203ENST00000622054 312 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC005609.4-201ENST00000625071 447 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.71□□□□□ -1.98
USP28Q96RU2 MIR1291-201ENST00000627649 87 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.71□□□□□ -1.98
USP28Q96RU2 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.71□□□□□ -1.98
USP28Q96RU2 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.71□□□□□ -1.98
USP28Q96RU2 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.71□□□□□ -1.98
USP28Q96RU2 AL354685.2-201ENST00000448218 1447 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RNU6-270P-201ENST00000364131 105 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RNU6-7-201ENST00000364784 107 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RNU6-8-201ENST00000365467 107 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 SET-203ENST00000372688 801 ntTSL 2 BASIC2.7□□□□□ -1.98
USP28Q96RU2 Y_RNA.390-201ENST00000383932 102 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 MIR1277-201ENST00000408536 78 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RNU6-1068P-201ENST00000410958 103 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.7□□□□□ -1.98
USP28Q96RU2 AC009963.1-201ENST00000417265 157 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AL358075.3-201ENST00000426289 226 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.7□□□□□ -1.98
USP28Q96RU2 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.7□□□□□ -1.98
USP28Q96RU2 CBWD4P-201ENST00000445695 655 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RPS15AP27-201ENST00000449183 343 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC073415.1-201ENST00000449240 153 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 FABP5P13-201ENST00000452144 328 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AL356010.1-201ENST00000456364 102 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC022364.2-201ENST00000457963 554 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.7□□□□□ -1.98
USP28Q96RU2 MTCO3P9-201ENST00000506989 781 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RNU6-1282P-201ENST00000516735 96 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 RN7SKP219-201ENST00000516825 296 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.7□□□□□ -1.98
USP28Q96RU2 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.7□□□□□ -1.98
USP28Q96RU2 AC234778.2-201ENST00000566241 354 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 MIR5583-1-201ENST00000580941 59 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC008521.1-201ENST00000587471 187 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 NRBF2P5-201ENST00000603087 788 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC103810.6-201ENST00000606708 136 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 FRG1KP-201ENST00000623592 341 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AL049641.1-201ENST00000441055 1948 ntBASIC2.7□□□□□ -1.98
USP28Q96RU2 AC022336.2-201ENST00000568966 2538 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.69□□□□□ -1.98
USP28Q96RU2 RNA5SP393-201ENST00000363423 117 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 Y_RNA.295-201ENST00000364918 102 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 RNU6-996P-201ENST00000365438 107 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 USP9YP6-201ENST00000413550 854 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 CALM2P2-201ENST00000428512 440 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AL714022.1-201ENST00000439897 151 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 PIGFP3-201ENST00000441918 722 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.69□□□□□ -1.98
USP28Q96RU2 RNU7-182P-201ENST00000459009 62 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AL135752.1-201ENST00000479477 471 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AC098591.2-201ENST00000510152 315 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AL512310.1-201ENST00000548639 172 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 MIR4703-201ENST00000577728 79 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 OR1M4P-201ENST00000589199 287 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 RBM11P1-201ENST00000604951 799 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms