Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU2-12P-201ENST00000517216 168 ntBASIC-0.31□□□□□ -2.46
VPS13AQ96RL7 AC011260.1-201ENST00000578420 472 ntBASIC-0.31□□□□□ -2.46
VPS13AQ96RL7 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MIR3165-201ENST00000579874 75 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 HMGN2P15-201ENST00000585707 270 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AC004832.4-201ENST00000608952 331 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MIR548AZ-201ENST00000616567 95 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 RNU6-119P-201ENST00000364882 107 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 RNU6-945P-201ENST00000383947 107 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 RNU6-26P-201ENST00000383985 107 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MIR506-201ENST00000384998 124 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AL513475.1-201ENST00000406602 315 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MTND4P20-201ENST00000424125 869 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 SNORD126-201ENST00000459475 77 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AC093534.1-201ENST00000504977 132 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 AC012414.6-201ENST00000568241 401 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MIR4713-201ENST00000582691 75 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 MIR3616-201ENST00000584070 92 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 ZNF92P3-201ENST00000596594 954 ntBASIC-0.32□□□□□ -2.46
VPS13AQ96RL7 SPINT5P-201ENST00000448174 155 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AC114981.1-201ENST00000503897 678 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 Z98751.3-201ENST00000604447 521 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 ZNF663P-202ENST00000641770 1131 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 RN7SKP158-201ENST00000410453 326 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 RNFT1P2-201ENST00000443064 757 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 RNA5SP275-201ENST00000363936 118 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 CALM2P3-201ENST00000400429 449 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AL049545.1-201ENST00000401856 572 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 RN7SKP266-201ENST00000410232 287 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 AC099654.5-201ENST00000636479 350 ntBASIC-0.33□□□□□ -2.46
VPS13AQ96RL7 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 RNY4P7-201ENST00000364600 96 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 EIF4EP4-201ENST00000424916 578 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 MTCO2P12-201ENST00000427426 682 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 AP003066.2-201ENST00000529375 555 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 AC121334.2-201ENST00000605387 271 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 RNA5SP212-201ENST00000391223 107 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 SNORD75.1-201ENST00000408373 60 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 MTCO1P18-201ENST00000455518 1419 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 FCF1P6-201ENST00000456841 595 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 OR5H4P-201ENST00000510851 923 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 MTCO2P32-201ENST00000514865 403 ntBASIC-0.34□□□□□ -2.46
VPS13AQ96RL7 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 AC021146.9-201ENST00000512503 156 ntBASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 RNU6-320P-201ENST00000516511 106 ntBASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 IGHVIII-38-1-201ENST00000521454 282 ntBASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 AC009318.3-201ENST00000616916 503 ntBASIC-0.35□□□□□ -2.46
VPS13AQ96RL7 RNU1-105P-201ENST00000363470 161 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 MIR196A2-201ENST00000385189 110 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AL589655.1-201ENST00000405398 482 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AC092423.1-201ENST00000430165 186 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AL353691.1-201ENST00000451332 387 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 TRGVB-201ENST00000453257 471 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AC087588.1-201ENST00000462203 316 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 HSPA8P13-201ENST00000523715 472 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 VN1R84P-201ENST00000593697 235 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AC092354.1-201ENST00000606057 376 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 Y_RNA.146-201ENST00000363549 102 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 SNORA29-201ENST00000384183 140 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 PCNAP1-202ENST00000595299 752 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 AC134026.1-201ENST00000623249 2239 ntBASIC-0.35□□□□□ -2.47
VPS13AQ96RL7 RNU6-657P-201ENST00000383904 107 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 DDX3P2-201ENST00000446138 111 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 RPL7P43-201ENST00000478876 753 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 AC105914.1-201ENST00000511798 226 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 AC069304.2-201ENST00000605154 435 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 RNU6-110P-201ENST00000384508 104 ntBASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC-0.36□□□□□ -2.47
VPS13AQ96RL7 AC099677.1-201ENST00000420575 175 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 AL512844.2-201ENST00000433990 593 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 RNF2P1-201ENST00000442955 1010 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 SNORD116-28-201ENST00000516123 91 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms