Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.97□□□□□ -2.25
USP54Q70EL1 MIR924-201ENST00000638017 53 ntBASIC0.97□□□□□ -2.25
USP54Q70EL1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
USP54Q70EL1 RNU5E-8P-201ENST00000363502 116 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 MIR1302-8-201ENST00000408342 128 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 PTGES3P4-201ENST00000426243 356 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.96□□□□□ -2.26
USP54Q70EL1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.96□□□□□ -2.26
USP54Q70EL1 AC010133.1-201ENST00000615809 842 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 MIR2909-201ENST00000617113 69 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 MIR6835-201ENST00000621552 64 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 AL590396.4-201ENST00000636779 956 ntBASIC0.96□□□□□ -2.26
USP54Q70EL1 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.96□□□□□ -2.26
USP54Q70EL1 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC0.96□□□□□ -2.26
USP54Q70EL1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
USP54Q70EL1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
USP54Q70EL1 OR4G2P-201ENST00000328113 903 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 SNORD26-201ENST00000384147 75 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 MIR30A-201ENST00000385092 71 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
USP54Q70EL1 SNORD65C-201ENST00000390962 71 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 RPL22P22-201ENST00000395439 379 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 MTCO2P5-201ENST00000422621 426 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.95□□□□□ -2.26
USP54Q70EL1 HSPE1P21-201ENST00000438283 308 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 FCF1P6-201ENST00000456841 595 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.95□□□□□ -2.26
USP54Q70EL1 AC112771.1-201ENST00000463581 102 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 AC139453.3-201ENST00000493276 369 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 SNORA25.11-201ENST00000515935 105 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 Y_RNA.681-201ENST00000516445 113 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 ROCK1P1-201ENST00000573767 549 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 AC133794.1-201ENST00000602731 914 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 AC018638.7-201ENST00000605836 1114 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.95□□□□□ -2.26
USP54Q70EL1 AC087821.2-201ENST00000637086 450 ntBASIC0.95□□□□□ -2.26
USP54Q70EL1 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
USP54Q70EL1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
USP54Q70EL1 RNA5SP499-201ENST00000363982 119 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 MIR29C-201ENST00000385231 88 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC127391.1-201ENST00000411737 98 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 MTND1P21-201ENST00000412991 285 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 UBE2V1P4-201ENST00000425374 344 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.94□□□□□ -2.26
USP54Q70EL1 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.94□□□□□ -2.26
USP54Q70EL1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.94□□□□□ -2.26
USP54Q70EL1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.94□□□□□ -2.26
USP54Q70EL1 AL078605.1-201ENST00000603529 500 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AP001485.1-201ENST00000604799 199 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 ELOCP5-201ENST00000604924 333 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AL139344.1-201ENST00000605228 195 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC091946.2-201ENST00000606105 291 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC007490.1-201ENST00000624321 703 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC019226.1-201ENST00000625666 515 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.94□□□□□ -2.26
USP54Q70EL1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.94□□□□□ -2.26
USP54Q70EL1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.94□□□□□ -2.26
USP54Q70EL1 SNORD56.4-201ENST00000363883 71 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 RNU6-796P-201ENST00000391086 107 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 BTF3L4P2-201ENST00000392798 346 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
USP54Q70EL1 RPL30P13-201ENST00000418873 348 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.94□□□□□ -2.26
USP54Q70EL1 AC019178.2-201ENST00000423595 505 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 USP9YP24-201ENST00000434374 697 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 RPS15AP9-201ENST00000439856 381 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 OFD1P3Y-201ENST00000453312 783 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 GTF2IP12-201ENST00000456547 356 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC112492.4-201ENST00000456549 352 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.94□□□□□ -2.26
USP54Q70EL1 RNU6-885P-201ENST00000516607 104 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC0.94□□□□□ -2.26
USP54Q70EL1 AC104229.1-201ENST00000561364 255 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC002545.1-201ENST00000592511 181 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC091152.3-201ENST00000604227 325 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.94□□□□□ -2.26
USP54Q70EL1 AL022345.1-201ENST00000607292 135 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AF129408.1-201ENST00000608767 431 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AC009974.1-201ENST00000608881 455 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 AL118556.2-201ENST00000614375 824 ntBASIC0.94□□□□□ -2.26
USP54Q70EL1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.93□□□□□ -2.26
USP54Q70EL1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.93□□□□□ -2.26
USP54Q70EL1 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
USP54Q70EL1 RNU6-223P-201ENST00000362830 107 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 RNU6-1280P-201ENST00000365211 107 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 RNU6-748P-201ENST00000384648 107 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AL451054.2-201ENST00000420896 202 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AL353706.1-201ENST00000436728 494 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.93□□□□□ -2.26
USP54Q70EL1 AC021146.2-201ENST00000504736 556 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AC004812.1-201ENST00000540773 146 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.93□□□□□ -2.26
USP54Q70EL1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.93□□□□□ -2.26
USP54Q70EL1 AC009229.3-201ENST00000608056 282 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AC090970.3-201ENST00000612566 866 ntBASIC0.93□□□□□ -2.26
USP54Q70EL1 AC091965.5-201ENST00000624785 342 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms