Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR6130-201ENST00000619419 109 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 Y_RNA.60-201ENST00000362831 98 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 FABP5P14-201ENST00000437273 393 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AL358794.1-201ENST00000445689 381 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 RPL30P7-201ENST00000479312 323 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AC010409.1-201ENST00000487382 476 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 HMGB1P36-201ENST00000487709 576 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.38□□□□□ -2.35
USF3Q68DE3 MTCYBP16-201ENST00000509187 1129 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.38□□□□□ -2.35
USF3Q68DE3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
USF3Q68DE3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.38□□□□□ -2.35
USF3Q68DE3 AC010620.1-201ENST00000601088 1102 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AL355472.4-201ENST00000610233 626 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
USF3Q68DE3 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
USF3Q68DE3 MIR26B-201ENST00000362251 77 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
USF3Q68DE3 MIR506-201ENST00000384998 124 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNU2-15P-201ENST00000410692 191 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 MED14P1-201ENST00000430517 648 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.37□□□□□ -2.35
USF3Q68DE3 MTCO3P2-201ENST00000457365 171 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC008379.1-201ENST00000463655 464 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 LARP1BP2-201ENST00000486594 519 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNA5SP404-201ENST00000517118 132 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC073968.1-201ENST00000618594 637 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC027335.2-201ENST00000624030 375 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC092125.1-201ENST00000562568 1995 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNU6-486P-201ENST00000363116 107 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNU6-26P-201ENST00000383985 107 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNU6-441P-201ENST00000384545 106 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
USF3Q68DE3 AC127391.1-201ENST00000411737 98 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 FTH1P12-201ENST00000432137 551 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 DDX3P2-201ENST00000446138 111 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 PRELID3BP1-201ENST00000457142 540 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
USF3Q68DE3 AC093677.1-201ENST00000514414 678 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 SNORA62.5-201ENST00000516634 120 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 RNU6-902P-201ENST00000517212 91 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 COPS8P3-201ENST00000526024 482 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 CYCSP27-201ENST00000527643 293 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.37□□□□□ -2.35
USF3Q68DE3 AC090115.3-201ENST00000553218 849 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.37□□□□□ -2.35
USF3Q68DE3 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.37□□□□□ -2.35
USF3Q68DE3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.37□□□□□ -2.35
USF3Q68DE3 uc_338.17-201ENST00000619633 179 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC092608.3-201ENST00000625017 386 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 AC099654.5-201ENST00000636479 350 ntBASIC0.37□□□□□ -2.35
USF3Q68DE3 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 RNU5A-1-201ENST00000362698 116 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 SNORD1A-201ENST00000364968 72 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.36□□□□□ -2.35
USF3Q68DE3 MIR100-201ENST00000385259 80 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 RNU2-36P-201ENST00000410361 191 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 CR769776.1-201ENST00000441254 787 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AC112771.1-201ENST00000463581 102 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC113420.1-201ENST00000507903 571 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 RNU6-202P-201ENST00000515998 96 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 RNU7-40P-201ENST00000516397 64 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 SNORA48.9-201ENST00000516419 162 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 SNORA31.22-201ENST00000517204 135 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 APOOP3-201ENST00000536787 586 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AL132857.1-201ENST00000555180 708 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC233702.2-202ENST00000562547 291 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 LINC00557-201ENST00000563184 1279 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC090079.2-201ENST00000575289 768 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.36□□□□□ -2.35
USF3Q68DE3 BBIP1P1-201ENST00000602999 279 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AP000403.1-201ENST00000603349 851 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC092953.2-201ENST00000608000 699 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AL359314.1-201ENST00000616913 261 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC024581.2-201ENST00000619986 252 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.36□□□□□ -2.35
USF3Q68DE3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.36□□□□□ -2.35
USF3Q68DE3 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
USF3Q68DE3 Y_RNA.471-201ENST00000384312 102 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 MIR618-201ENST00000385287 98 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AL591034.2-201ENST00000402839 359 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AL117342.1-201ENST00000404861 406 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 CCNG1P1-201ENST00000406783 885 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AC004865.1-201ENST00000442276 1003 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AL353691.1-201ENST00000451332 387 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 CYP2C59P-201ENST00000457790 269 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC013267.1-201ENST00000458227 267 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 SUMO1P1-201ENST00000497904 306 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC0.36□□□□□ -2.35
USF3Q68DE3 AP003034.1-201ENST00000534621 422 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 MIR4653-201ENST00000585107 83 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 BNIP3P23-201ENST00000599655 511 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC242628.1-201ENST00000606810 391 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 AC004067.1-201ENST00000608733 700 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms