Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 AC025755.1-201ENST00000521306 278 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 APOOP3-201ENST00000536787 586 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 MIR5692A1-201ENST00000580523 69 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 AC002044.1-201ENST00000606707 158 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 AC103705.1-201ENST00000619013 241 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 MTND5P27-201ENST00000428871 1720 ntBASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SLC44A4Q53GD3 Y_RNA.31-201ENST00000362574 102 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RNA5SP374-201ENST00000362939 125 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 Y_RNA.445-201ENST00000384168 102 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RNU6-308P-201ENST00000390957 107 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RPLP0P7-201ENST00000416050 667 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 MYL8P-204ENST00000431574 518 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC090096.1-201ENST00000489168 390 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC010265.1-201ENST00000513509 211 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RN7SKP24-201ENST00000515888 284 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RNU1-86P-201ENST00000516108 154 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RNU1-107P-201ENST00000516617 154 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 RNU6-566P-201ENST00000516790 107 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AP000889.2-201ENST00000532684 490 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AL163153.1-201ENST00000554223 283 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 MTCO3P23-201ENST00000561363 289 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 MIR4738-201ENST00000579134 87 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 MIR3672-201ENST00000584290 82 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC008962.1-201ENST00000605729 304 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AL355802.3-201ENST00000607571 545 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC007656.2-201ENST00000624902 4547 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 AC121333.1-201ENST00000567488 2709 ntBASIC3.59□□□□□ -1.83
SLC44A4Q53GD3 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SLC44A4Q53GD3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
SLC44A4Q53GD3 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-254P-201ENST00000363377 107 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 Y_RNA.202-201ENST00000364083 110 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-270P-201ENST00000364131 105 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 SNORA33.2-201ENST00000365413 134 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-395P-201ENST00000365662 106 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-217P-201ENST00000384164 104 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RPS4XP3-201ENST00000398541 413 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AP000567.1-201ENST00000406413 156 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-370P-201ENST00000411008 104 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC074085.1-201ENST00000413598 418 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC107399.1-201ENST00000451226 265 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AL583843.1-201ENST00000456070 346 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC130509.1-201ENST00000464158 433 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 S100A11P2-201ENST00000467589 312 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 UBE2DNL-203ENST00000474922 222 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 Y_RNA.711-201ENST00000516993 102 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC008737.2-201ENST00000599446 118 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 HSPE1P7-201ENST00000604681 321 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC007938.3-201ENST00000604965 623 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AC016925.2-201ENST00000605108 242 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 AL121655.1-201ENST00000605811 308 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 CUL1P1-201ENST00000509510 2425 ntBASIC3.58□□□□□ -1.84
SLC44A4Q53GD3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 AL365361.1-201ENST00000566942 3481 ntBASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 AF117829.1-206ENST00000621883 3802 ntBASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 SNORD113-7-201ENST00000363762 77 ntBASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 Y_RNA.510-201ENST00000384511 114 ntBASIC3.57□□□□□ -1.84
SLC44A4Q53GD3 EIF4E2P1-201ENST00000393781 255 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms