Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA24.1-201ENST00000384401 135 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 CISD1P1-201ENST00000393907 327 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 U3.40-201ENST00000408706 208 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 Y_RNA.623-201ENST00000411128 95 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AL365338.1-201ENST00000422282 858 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 SRIP2-201ENST00000428470 166 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 MTND6P13-201ENST00000443510 523 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 RPL7P43-201ENST00000478876 753 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC112206.3-201ENST00000514578 389 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 RNU6-1220P-201ENST00000517126 108 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC135279.1-201ENST00000543493 504 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 DEFB131E-202ENST00000602581 683 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AL138963.2-201ENST00000605137 226 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AL121917.1-203ENST00000605534 577 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AL139286.2-201ENST00000606838 396 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 RNU6-91P-201ENST00000607774 107 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC012360.2-201ENST00000609349 391 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 MIR6873-201ENST00000622788 63 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 AC008993.2-201ENST00000631744 806 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC40Q4G0X9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 MIR412-201ENST00000362142 91 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNU6-641P-201ENST00000384006 107 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNU1-148P-201ENST00000384472 162 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 MIR1302-8-201ENST00000408342 128 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 SNORA11.4-201ENST00000408823 129 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNA5SP338-201ENST00000410495 85 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNU2-8P-201ENST00000410727 190 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNA5SP270-201ENST00000411361 118 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL031779.1-201ENST00000415663 330 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL365203.2-201ENST00000423444 196 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RPL7P34-201ENST00000433316 712 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL353706.1-201ENST00000436728 494 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC016691.1-201ENST00000441321 413 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL118520.1-201ENST00000450770 291 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL133217.1-201ENST00000450980 425 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC117522.1-201ENST00000509821 380 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC005771.1-201ENST00000585581 349 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AL031601.2-202ENST00000622650 282 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 AC092656.1-203ENST00000624134 423 ntBASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC40Q4G0X9 RNA5SP138-201ENST00000365098 114 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 SNORA20.2-201ENST00000383922 131 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC104850.1-201ENST00000435940 476 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 ART2BP-201ENST00000453501 499 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 RNU6-717P-201ENST00000459076 104 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 RPS27P21-201ENST00000486977 252 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 OR5AQ1P-201ENST00000527596 927 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC118273.2-201ENST00000532092 465 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 SNRPGP18-201ENST00000553000 214 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 MIR3915-201ENST00000578518 97 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 MIR4448-201ENST00000584360 86 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 BNIP3P8-201ENST00000597863 560 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC025165.5-201ENST00000602802 578 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC068276.1-201ENST00000605793 379 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 U4atac.1-201ENST00000618345 95 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AC007494.3-201ENST00000624660 743 ntBASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC40Q4G0X9 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AC138393.1-203ENST00000327086 343 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RNU6-858P-201ENST00000362436 107 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 U8.3-201ENST00000363321 132 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RNY1P12-201ENST00000364251 105 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 XGY1-201ENST00000381172 446 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RNU2-63P-201ENST00000410792 194 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AL627311.1-201ENST00000431514 115 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 snoU109.2-201ENST00000459316 135 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 MED28P2-201ENST00000475771 317 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AC140059.1-201ENST00000489238 361 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RBBP4P6-201ENST00000508098 202 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RPL23AP94-201ENST00000512518 302 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 SCARNA24.1-201ENST00000516465 137 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms