Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC112198.4-201ENST00000515450 351 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.93□□□□□ -2.26
CHD3Q12873 BNIP3P23-201ENST00000599655 511 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC013476.2-201ENST00000614456 459 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC010487.4-201ENST00000637027 61 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 RNU6-883P-201ENST00000384597 107 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AL158050.1-201ENST00000416077 457 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 DPRXP1-201ENST00000426312 460 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC093106.2-201ENST00000428212 385 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD3Q12873 AL354941.1-201ENST00000438600 464 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 RPL30P12-201ENST00000474666 353 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 RPL7P43-201ENST00000478876 753 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD3Q12873 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC0.93□□□□□ -2.26
CHD3Q12873 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD3Q12873 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.93□□□□□ -2.26
CHD3Q12873 AL512347.1-201ENST00000566420 503 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD3Q12873 AC069304.2-201ENST00000605154 435 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC096772.1-201ENST00000609146 564 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 AC231657.1-201ENST00000624313 397 ntBASIC0.93□□□□□ -2.26
CHD3Q12873 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CHD3Q12873 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CHD3Q12873 ZNF29P-201ENST00000225587 168 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 RNA5SP257-201ENST00000363023 116 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 RNU6-353P-201ENST00000364266 108 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 RNU6-898P-201ENST00000365627 104 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD3Q12873 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CHD3Q12873 SNRPEP10-201ENST00000420249 274 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 CR848007.2-201ENST00000424918 787 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 MTCYBP32-201ENST00000427945 1084 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.92□□□□□ -2.26
CHD3Q12873 MTND2P20-201ENST00000440805 661 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 MTCO3P45-201ENST00000443036 613 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD3Q12873 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD3Q12873 OFD1P7Y-201ENST00000454643 1155 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD3Q12873 RNA5SP384-201ENST00000516615 116 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD3Q12873 AL132857.1-201ENST00000555180 708 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AC103810.8-201ENST00000607347 118 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 AC008133.2-201ENST00000624540 351 ntBASIC0.92□□□□□ -2.26
CHD3Q12873 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.92□□□□□ -2.26
CHD3Q12873 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 RNU6-637P-201ENST00000384050 107 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 SNORA8-201ENST00000384574 139 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MIR518D-201ENST00000385014 87 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC009310.1-201ENST00000414414 451 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 EBAG9P1-201ENST00000418955 543 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.91□□□□□ -2.26
CHD3Q12873 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 GPM6BP2-201ENST00000432046 144 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 GPM6BP1-201ENST00000446387 144 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC020550.1-201ENST00000447385 163 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RNU7-136P-201ENST00000458819 69 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RNU7-140P-201ENST00000459546 60 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RPL22P13-201ENST00000493291 347 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RPF2P2-201ENST00000504693 896 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC110760.3-202ENST00000515177 371 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 AC079148.1-201ENST00000565944 819 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MIR4782-201ENST00000577987 79 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MIR8084-201ENST00000614105 89 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC019226.1-201ENST00000625666 515 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.91□□□□□ -2.26
CHD3Q12873 AC132825.7-201ENST00000638744 335 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MTND4P21-201ENST00000453886 1357 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RNU6-1207P-201ENST00000384343 107 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MIR625-201ENST00000385047 85 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RNU11-5P-201ENST00000391216 129 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 HMGN2P39-201ENST00000398005 273 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 AC002381.1-201ENST00000447049 280 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.91□□□□□ -2.26
CHD3Q12873 AC098862.1-201ENST00000504991 413 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC010468.3-201ENST00000508225 458 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD3Q12873 SNORA4.4-201ENST00000515921 135 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 RNU6-714P-201ENST00000516963 103 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AP000403.1-201ENST00000603349 851 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 AC018638.7-201ENST00000605836 1114 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.91□□□□□ -2.26
CHD3Q12873 AC107075.1-201ENST00000613695 314 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 Z99571.1-201ENST00000636677 394 ntBASIC0.91□□□□□ -2.26
CHD3Q12873 MIR216A-201ENST00000385063 110 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 MIR1305-201ENST00000408300 86 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD3Q12873 RAC1P8-201ENST00000427086 527 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AL591704.1-201ENST00000432574 275 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD3Q12873 AC245102.2-201ENST00000448956 180 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC012308.1-201ENST00000451232 178 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD3Q12873 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.9□□□□□ -2.27
CHD3Q12873 CYB5AP5-201ENST00000549779 389 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms