Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.5□□□□□ -2.17
FOXA1P55317 SNORD97-201ENST00000459187 142 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AP001324.2-201ENST00000461163 319 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC1.5□□□□□ -2.17
FOXA1P55317 RNU6-201P-201ENST00000517100 61 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC009902.1-201ENST00000519351 183 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC107934.1-201ENST00000522215 217 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.5□□□□□ -2.17
FOXA1P55317 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
FOXA1P55317 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.5□□□□□ -2.17
FOXA1P55317 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
FOXA1P55317 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC025165.5-201ENST00000602802 578 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.6-201ENST00000603753 252 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AP000811.1-201ENST00000603803 651 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.11-201ENST00000604059 253 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC008162.1-201ENST00000604718 254 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.1-201ENST00000604752 252 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.5-201ENST00000605253 252 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.12-201ENST00000605291 253 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.8-201ENST00000605353 252 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL670379.7-201ENST00000605823 252 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 MIR502-201ENST00000606349 86 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC092953.2-201ENST00000608000 699 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 uc_338.5-201ENST00000611839 155 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL161423.1-201ENST00000613700 262 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC005296.1-201ENST00000616145 209 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 uc_338.12-201ENST00000616344 181 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
FOXA1P55317 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
FOXA1P55317 AL359854.1-201ENST00000614203 1594 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.5□□□□□ -2.17
FOXA1P55317 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
FOXA1P55317 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.49□□□□□ -2.17
FOXA1P55317 RNU6-511P-201ENST00000363496 107 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 RNY4P16-201ENST00000364768 94 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
FOXA1P55317 RNU6-809P-201ENST00000384461 107 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 RN7SKP158-201ENST00000410453 326 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 RNA5SP270-201ENST00000411361 118 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC013410.2-201ENST00000422627 201 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC1.49□□□□□ -2.17
FOXA1P55317 RPL37P21-201ENST00000435890 276 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.49□□□□□ -2.17
FOXA1P55317 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.49□□□□□ -2.17
FOXA1P55317 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC1.49□□□□□ -2.17
FOXA1P55317 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.49□□□□□ -2.17
FOXA1P55317 RNU6-953P-201ENST00000459154 107 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC080013.2-201ENST00000460866 323 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 KLF3P2-201ENST00000465138 268 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.49□□□□□ -2.17
FOXA1P55317 RNU7-193P-201ENST00000516723 65 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 RNU6-572P-201ENST00000516724 80 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.49□□□□□ -2.17
FOXA1P55317 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.49□□□□□ -2.17
FOXA1P55317 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
FOXA1P55317 AC105245.1-201ENST00000581934 244 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AP001981.2-201ENST00000603241 418 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC144521.1-201ENST00000607148 956 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC024933.1-201ENST00000608472 348 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 AC006338.1-201ENST00000618453 749 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.49□□□□□ -2.17
FOXA1P55317 AL512643.1-201ENST00000635735 524 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 MTND5P42-201ENST00000637720 498 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.49□□□□□ -2.17
FOXA1P55317 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA1P55317 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA1P55317 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
FOXA1P55317 RNU6-486P-201ENST00000363116 107 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 Y_RNA.140-201ENST00000363474 103 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 Y_RNA.534-201ENST00000384599 112 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 MIR676-201ENST00000390702 67 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 U6atac.2-201ENST00000408644 118 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 RPS20P15-201ENST00000412792 311 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA1P55317 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA1P55317 RPS27AP14-201ENST00000422868 454 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA1P55317 AC124916.1-201ENST00000444020 547 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 Z73417.1-201ENST00000447373 778 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA1P55317 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA1P55317 AMD1P1-201ENST00000457220 922 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 SNORD11.1-201ENST00000459482 85 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA1P55317 RPL22P13-201ENST00000493291 347 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA1P55317 RNA5SP112-201ENST00000515937 99 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 RNU6-1092P-201ENST00000516955 87 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC022616.6-201ENST00000520479 119 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AP005435.4-201ENST00000529514 284 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA1P55317 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.48□□□□□ -2.17
FOXA1P55317 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms