Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.92□□□□□ -2.1
RFX3P48380 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.92□□□□□ -2.1
RFX3P48380 RPL23AP7-203ENST00000449021 469 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AL021397.1-201ENST00000451806 248 ntBASIC1.92□□□□□ -2.1
RFX3P48380 snoU13.15-201ENST00000459407 104 ntBASIC1.92□□□□□ -2.1
RFX3P48380 RPL30P6-201ENST00000475925 342 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC007182.2-201ENST00000489251 402 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.92□□□□□ -2.1
RFX3P48380 RPS29P21-201ENST00000496272 170 ntBASIC1.92□□□□□ -2.1
RFX3P48380 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.92□□□□□ -2.1
RFX3P48380 RN7SKP287-201ENST00000516546 266 ntBASIC1.92□□□□□ -2.1
RFX3P48380 MIR514B-201ENST00000516774 80 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.92□□□□□ -2.1
RFX3P48380 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.92□□□□□ -2.1
RFX3P48380 MIR5697-201ENST00000578045 78 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC090616.2-202ENST00000584248 222 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC093424.1-201ENST00000604999 338 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AC105129.3-201ENST00000605455 485 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AP002360.4-201ENST00000606980 481 ntBASIC1.92□□□□□ -2.1
RFX3P48380 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.92□□□□□ -2.1
RFX3P48380 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
RFX3P48380 RNU6-395P-201ENST00000365662 106 ntBASIC1.91□□□□□ -2.1
RFX3P48380 SNORA40C-201ENST00000391285 128 ntBASIC1.91□□□□□ -2.1
RFX3P48380 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
RFX3P48380 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
RFX3P48380 MIR1302-8-201ENST00000408342 128 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.91□□□□□ -2.1
RFX3P48380 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.91□□□□□ -2.1
RFX3P48380 AL160275.3-201ENST00000423876 471 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.91□□□□□ -2.1
RFX3P48380 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.91□□□□□ -2.1
RFX3P48380 RPL7P34-201ENST00000433316 712 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC119618.1-201ENST00000434191 222 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC010095.1-201ENST00000443543 144 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AL078601.1-201ENST00000444542 271 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.91□□□□□ -2.1
RFX3P48380 BTF3P15-201ENST00000455606 336 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AP000797.1-201ENST00000478870 387 ntBASIC1.91□□□□□ -2.1
RFX3P48380 RPL7P43-201ENST00000478876 753 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC005178.1-201ENST00000508392 440 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AF131216.2-201ENST00000512316 564 ntBASIC1.91□□□□□ -2.1
RFX3P48380 RNA5SP337-201ENST00000517007 109 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AP003122.4-201ENST00000530980 758 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.91□□□□□ -2.1
RFX3P48380 AL157871.3-201ENST00000557231 293 ntBASIC1.91□□□□□ -2.1
RFX3P48380 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.91□□□□□ -2.1
RFX3P48380 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.91□□□□□ -2.1
RFX3P48380 RNU6-91P-201ENST00000607774 107 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AL355816.2-201ENST00000610049 647 ntBASIC1.91□□□□□ -2.1
RFX3P48380 AC130324.3-201ENST00000614165 542 ntBASIC1.91□□□□□ -2.1
RFX3P48380 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.91□□□□□ -2.1
RFX3P48380 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
RFX3P48380 Y_RNA.33-201ENST00000362591 102 ntBASIC1.9□□□□□ -2.11
RFX3P48380 SNORD56.2-201ENST00000363242 71 ntBASIC1.9□□□□□ -2.11
RFX3P48380 RNU5F-7P-201ENST00000363696 115 ntBASIC1.9□□□□□ -2.11
RFX3P48380 RNU5E-5P-201ENST00000365379 116 ntBASIC1.9□□□□□ -2.11
RFX3P48380 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
RFX3P48380 RNU2-8P-201ENST00000410727 190 ntBASIC1.9□□□□□ -2.11
RFX3P48380 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.9□□□□□ -2.11
RFX3P48380 AC092809.3-201ENST00000415453 231 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 SRIP2-201ENST00000428470 166 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 AC009238.1-201ENST00000442165 424 ntBASIC1.9□□□□□ -2.11
RFX3P48380 USP9YP15-201ENST00000442391 422 ntBASIC1.9□□□□□ -2.11
RFX3P48380 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.9□□□□□ -2.11
RFX3P48380 AC009237.6-201ENST00000446969 424 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 MTND4P2-201ENST00000507767 1203 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.9□□□□□ -2.11
RFX3P48380 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.9□□□□□ -2.11
RFX3P48380 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.9□□□□□ -2.11
RFX3P48380 AC022878.1-201ENST00000530684 149 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.9□□□□□ -2.11
RFX3P48380 AC025678.1-201ENST00000567861 338 ntBASIC1.9□□□□□ -2.11
RFX3P48380 MIR3126-201ENST00000577443 74 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.9□□□□□ -2.11
RFX3P48380 MIR3935-201ENST00000583472 104 ntBASIC1.9□□□□□ -2.11
RFX3P48380 MIR4760-201ENST00000585040 80 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL713866.2-201ENST00000603579 219 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC009314.1-201ENST00000603871 304 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL670379.10-201ENST00000604330 253 ntBASIC1.9□□□□□ -2.11
RFX3P48380 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL670379.9-201ENST00000605428 253 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL359547.2-201ENST00000615810 418 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC027807.2-201ENST00000616099 408 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AC131159.1-201ENST00000621854 213 ntBASIC1.9□□□□□ -2.11
RFX3P48380 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.9□□□□□ -2.11
RFX3P48380 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.9□□□□□ -2.11
RFX3P48380 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.11
RFX3P48380 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.89□□□□□ -2.11
RFX3P48380 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
RFX3P48380 RNU4-1-201ENST00000363925 141 ntBASIC1.89□□□□□ -2.11
RFX3P48380 RNU6-166P-201ENST00000384371 107 ntBASIC1.89□□□□□ -2.11
RFX3P48380 MIR95-201ENST00000385072 81 ntBASIC1.89□□□□□ -2.11
RFX3P48380 SNORA46.1-201ENST00000391069 153 ntBASIC1.89□□□□□ -2.11
RFX3P48380 FTH1P15-201ENST00000406984 280 ntBASIC1.89□□□□□ -2.11
RFX3P48380 RNU6-1025P-201ENST00000410629 104 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms