Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AC125611.1-201ENST00000549563 229 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AL391261.3-201ENST00000557194 520 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 MTCO2P2-201ENST00000591258 225 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AP000238.1-201ENST00000608759 426 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.37□□□□□ -2.35
CCDC88BA6NC98 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.37□□□□□ -2.35
CCDC88BA6NC98 SNORD1A-201ENST00000364968 72 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 MTCO1P3-201ENST00000429327 192 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 RPS25P9-201ENST00000435591 252 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 FABP5P14-201ENST00000437273 393 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 MTCO2P20-201ENST00000437339 673 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AL592447.1-201ENST00000447592 540 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.36□□□□□ -2.35
CCDC88BA6NC98 CYP2C59P-201ENST00000457790 269 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AC006512.1-201ENST00000468816 291 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AC023050.2-201ENST00000544968 387 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AC073544.2-201ENST00000601155 540 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AL138726.1-201ENST00000614873 333 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 AC013470.4-201ENST00000619978 986 ntBASIC0.36□□□□□ -2.35
CCDC88BA6NC98 RNU6-439P-201ENST00000384188 106 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 MIR506-201ENST00000384998 124 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 RPS15AP5-201ENST00000436276 388 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AC104057.1-201ENST00000515547 497 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AC009233.1-201ENST00000616477 371 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AC090772.4-201ENST00000623599 362 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 SNORD33-201ENST00000362761 85 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 Y_RNA.549-201ENST00000384657 102 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 Z99497.1-201ENST00000421282 135 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AL606489.2-201ENST00000433886 234 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 MTND4LP10-201ENST00000435146 291 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 BET1P1-201ENST00000482276 359 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AC025465.3-201ENST00000510570 311 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 AL022345.2-201ENST00000606307 135 ntBASIC0.35□□□□□ -2.35
CCDC88BA6NC98 SNORA2A-201ENST00000383885 135 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AL049734.2-201ENST00000441066 616 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88BA6NC98 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
CCDC88BA6NC98 FCF1P6-201ENST00000456841 595 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC111193.1-201ENST00000504097 155 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC005741.1-201ENST00000511094 432 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 RNU4-54P-201ENST00000516428 129 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC008088.1-201ENST00000580993 280 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC073968.1-201ENST00000618594 637 ntBASIC0.34□□□□□ -2.36
CCDC88BA6NC98 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 SNRPEP3-201ENST00000338402 276 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 MIR29C-201ENST00000385231 88 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 MIR1283-2-201ENST00000408621 87 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AL163195.1-201ENST00000496941 348 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 SNRPGP17-201ENST00000603780 214 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AC024060.1-201ENST00000607052 494 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AC040168.1-201ENST00000623594 991 ntBASIC0.33□□□□□ -2.36
CCDC88BA6NC98 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88BA6NC98 AL049641.1-201ENST00000441055 1948 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 RNU6-251P-201ENST00000363235 104 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
CCDC88BA6NC98 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
CCDC88BA6NC98 RNA5SP501-201ENST00000410990 112 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 RPS27P16-201ENST00000425758 201 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 RAC1P7-201ENST00000445367 377 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 AC012414.6-201ENST00000568241 401 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 AC055876.5-201ENST00000605667 259 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 MIR8063-201ENST00000621930 81 ntBASIC0.32□□□□□ -2.36
CCDC88BA6NC98 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC88BA6NC98 RNU5E-1-201ENST00000362477 120 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 SNORA25B-201ENST00000365507 128 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 BTF3P8-201ENST00000414577 526 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 MED14P1-201ENST00000430517 648 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88BA6NC98 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.31□□□□□ -2.36
CCDC88BA6NC98 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88BA6NC98 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88BA6NC98 MIR4802-201ENST00000581881 80 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 BX284668.6-201ENST00000606899 438 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 AC080013.4-201ENST00000607624 649 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.31□□□□□ -2.36
CCDC88BA6NC98 MIR1303-201ENST00000408625 86 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 RPL23AP95-201ENST00000426806 265 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AL161788.1-201ENST00000441805 169 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms