Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 PLCE1P1-201ENST00000622094 305 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-562P-201ENST00000362731 107 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.813-201ENST00000364639 102 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-1303P-201ENST00000364841 107 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA46-201ENST00000384762 135 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA40C-201ENST00000391285 128 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 PTMAP2-201ENST00000397627 327 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.623-201ENST00000411128 95 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 TOMM20P4-201ENST00000427861 435 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC236972.2-201ENST00000434979 310 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC087884.1-201ENST00000469738 328 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC026801.1-201ENST00000497178 464 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC008526.1-201ENST00000509149 338 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC138761.3-201ENST00000579993 334 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC007938.3-201ENST00000604965 623 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC099778.2-201ENST00000610904 211 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 MIR6076-201ENST00000617521 113 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AC090574.1-201ENST00000623186 233 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 ZNF519P1-201ENST00000449011 1626 ntBASIC3.73□□□□□ -1.81
LIMCH1Q9UPQ0 FTLP6-201ENST00000355274 422 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA75B-201ENST00000384053 137 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 RPS4XP3-201ENST00000398541 413 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 RPL37P10-201ENST00000412884 288 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC098614.2-201ENST00000426040 255 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 SAR1AP4-201ENST00000429225 591 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 MTND1P17-201ENST00000448961 204 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC233279.1-201ENST00000455300 423 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 RN7SL293P-201ENST00000481765 281 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC139453.3-201ENST00000493276 369 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 RNU1-86P-201ENST00000516108 154 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 RNU1-107P-201ENST00000516617 154 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA31.19-201ENST00000517079 126 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 COPS8P3-201ENST00000526024 482 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC093027.1-201ENST00000546698 429 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC092628.2-201ENST00000622492 339 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 AC034229.5-201ENST00000624258 185 ntBASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
LIMCH1Q9UPQ0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.81
LIMCH1Q9UPQ0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.71□□□□□ -1.81
LIMCH1Q9UPQ0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1035P-201ENST00000384477 107 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 MIR34A-201ENST00000385130 110 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RN7SKP158-201ENST00000410453 326 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 UBE2V1P4-201ENST00000425374 344 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AL078601.1-201ENST00000444542 271 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 MTATP6P7-201ENST00000453315 681 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RPL21P10-201ENST00000463521 490 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 MTND5P5-201ENST00000503764 376 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 HMGN1P13-201ENST00000505795 138 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 HMGB3P15-201ENST00000507326 574 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1332P-201ENST00000516666 104 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-572P-201ENST00000516724 80 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 IGHV3-76-201ENST00000522465 295 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC026371.1-201ENST00000551867 419 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AMZ2P1-203ENST00000565833 850 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 OR1M4P-201ENST00000589199 287 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 APOOP1-201ENST00000604695 592 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC245389.1-201ENST00000605141 529 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-85P-201ENST00000605989 107 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC107294.3-201ENST00000609211 526 ntBASIC3.71□□□□□ -1.82
LIMCH1Q9UPQ0 AC002076.2-201ENST00000617362 122 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms