Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP001324.2-201ENST00000461163 319 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC022493.1-201ENST00000492984 337 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC008549.1-201ENST00000512900 643 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC117532.1-201ENST00000514638 323 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 Y_RNA.688-201ENST00000516565 95 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 RNU6-410P-201ENST00000517006 107 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 ACA59.2-201ENST00000517061 156 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MTCYBP20-201ENST00000524239 1129 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MIR3913-1-201ENST00000577744 102 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 SNORD53-201ENST00000579969 78 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MIR4435-1-201ENST00000582552 80 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MIR548AC-201ENST00000585049 88 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC008521.1-201ENST00000587471 187 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC098848.2-201ENST00000588023 330 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC110760.3-201ENST00000598794 467 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC087045.1-201ENST00000605856 382 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC098614.4-201ENST00000607601 462 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC010678.1-201ENST00000614118 713 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL590808.1-201ENST00000618696 141 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 CKAP2P1-201ENST00000555477 2049 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MAPK10-266ENST00000641066 6555 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MTND5P6-201ENST00000422338 1798 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 RNU6-220P-201ENST00000390919 107 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 BTF3P7-201ENST00000407097 488 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 Y_RNA.623-201ENST00000411128 95 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 GPR143P-201ENST00000434155 205 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL031667.1-201ENST00000440222 725 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC244505.5-201ENST00000443639 207 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC079781.2-201ENST00000446424 169 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MTCYBP1-201ENST00000454315 1119 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL583843.1-201ENST00000456070 346 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MTND4P2-201ENST00000507767 1203 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 RBBP4P6-201ENST00000508098 202 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC023824.2-201ENST00000566185 400 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC105137.2-201ENST00000569073 466 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC119751.7-201ENST00000600494 245 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC010620.1-201ENST00000601088 1102 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 DEFB131E-202ENST00000602581 683 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC245014.2-201ENST00000603689 287 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AC246785.4-201ENST00000605374 287 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL021997.1-201ENST00000605757 193 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL449363.1-201ENST00000617815 186 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MIR6766-201ENST00000622641 72 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 AL160394.1-201ENST00000624765 724 ntBASIC2.32□□□□□ -2.04
LHX3Q9UBR4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
LHX3Q9UBR4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 OR5H15-201ENST00000383696 930 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RNA5SP508-201ENST00000411327 119 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 C1DP2-201ENST00000418167 426 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AL365338.1-201ENST00000422282 858 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 BX276092.3-201ENST00000424182 230 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RPS15AP9-201ENST00000439856 381 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC090096.1-201ENST00000489168 390 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RPL22P13-201ENST00000493291 347 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC112206.3-201ENST00000514578 389 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RNA5SP112-201ENST00000515937 99 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AP003072.2-201ENST00000527756 676 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RANP3-201ENST00000530970 276 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC091544.4-201ENST00000555268 342 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC092325.1-201ENST00000566449 554 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AL670379.4-201ENST00000605279 254 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC093648.1-201ENST00000623546 606 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 AC093536.2-201ENST00000565257 1406 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 MTND5P17-201ENST00000418405 1603 ntBASIC2.31□□□□□ -2.04
LHX3Q9UBR4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.31□□□□□ -2.04
LHX3Q9UBR4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms