Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC092447.10-201ENST00000620607 1652 ntBASIC1.01□□□□□ -2.25
SCN3AQ9NY46 RNU1-58P-201ENST00000362413 163 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU1-22P-201ENST00000363334 158 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU6-343P-201ENST00000364709 104 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU6-898P-201ENST00000365627 104 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU1-39P-201ENST00000383897 165 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 U6.112-201ENST00000384129 70 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU2-41P-201ENST00000410991 178 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNU6-516P-201ENST00000411381 104 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 OR9R1P-201ENST00000412200 877 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1□□□□□ -2.25
SCN3AQ9NY46 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1□□□□□ -2.25
SCN3AQ9NY46 AL591704.1-201ENST00000432574 275 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1□□□□□ -2.25
SCN3AQ9NY46 AL354941.1-201ENST00000438600 464 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 BRK1P2-201ENST00000442875 223 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC013267.1-201ENST00000458227 267 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC093852.1-201ENST00000503587 266 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 RNA5SP137-201ENST00000516833 135 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1□□□□□ -2.25
SCN3AQ9NY46 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC1□□□□□ -2.25
SCN3AQ9NY46 MTATP6P25-201ENST00000574491 261 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 MTATP6P3-201ENST00000581686 676 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC005261.5-201ENST00000596280 355 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC1□□□□□ -2.25
SCN3AQ9NY46 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1□□□□□ -2.25
SCN3AQ9NY46 AC126118.1-201ENST00000607744 628 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 AC021755.4-201ENST00000616620 456 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 MIR3199-2-201ENST00000636243 86 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 OR4G1P-203ENST00000641984 1631 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1□□□□□ -2.25
SCN3AQ9NY46 CBX3P1-201ENST00000325243 554 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MIR518D-201ENST00000385014 87 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MIR1283-2-201ENST00000408621 87 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 CYCSP33-201ENST00000414485 327 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC244636.1-201ENST00000421152 228 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 RPL36AP53-201ENST00000432891 316 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 RPL23AP6-201ENST00000446637 472 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AL590365.1-201ENST00000450788 243 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 RPL21P134-201ENST00000453468 483 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC107032.1-201ENST00000485945 480 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MRPS33P3-201ENST00000513456 322 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC022861.1-201ENST00000522981 663 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC011604.1-201ENST00000545978 196 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 RNU6-1080P-201ENST00000383982 107 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 DHFRP6-201ENST00000401776 268 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 COX7BP2-201ENST00000437976 242 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 RNU6-703P-201ENST00000516946 107 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 ZNF971P-201ENST00000562068 1249 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AC093249.1-201ENST00000567049 203 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 AP005229.2-201ENST00000609980 697 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.99□□□□□ -2.25
SCN3AQ9NY46 Z99571.1-201ENST00000636677 394 ntBASIC0.99□□□□□ -2.25
SCN3AQ9NY46 NACAP2-201ENST00000318548 624 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 RNU6-207P-201ENST00000384137 107 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MTCO1P56-201ENST00000401674 224 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 FO393414.1-201ENST00000428697 1184 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MTCO3P43-201ENST00000440974 771 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC012308.1-201ENST00000451232 178 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC023194.1-201ENST00000493084 308 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 RNU6-1223P-201ENST00000517124 104 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 PSMA3P-201ENST00000555485 635 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC092140.2-201ENST00000618027 521 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MIR6734-201ENST00000621166 68 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL163152.1-201ENST00000642001 374 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL161722.3-201ENST00000605789 2983 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL079343.1-201ENST00000572358 1771 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 RNU6-486P-201ENST00000363116 107 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 RNU6-1280P-201ENST00000365211 107 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MIR1305-201ENST00000408300 86 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MIR548J-201ENST00000408833 112 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC009310.1-201ENST00000414414 451 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL139421.1-201ENST00000423010 169 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 SKA2P1-201ENST00000425592 390 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC092648.1-201ENST00000425870 423 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 SEPT14P24-201ENST00000447236 180 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC007395.1-201ENST00000451333 677 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms