Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.38□□□□□ -2.03
LIME1Q9H400 CALM2P3-201ENST00000400429 449 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC009963.1-201ENST00000417265 157 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC003685.2-201ENST00000422795 395 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AL078601.1-201ENST00000444542 271 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC073415.1-201ENST00000449240 153 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 PSPHP1-201ENST00000450062 261 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC003982.1-202ENST00000469928 248 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC083798.1-201ENST00000472671 131 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 UBL5P3-201ENST00000475112 231 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 RPS27P26-201ENST00000494583 239 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC112206.3-201ENST00000514578 389 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.38□□□□□ -2.03
LIME1Q9H400 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC104383.1-201ENST00000530297 370 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
LIME1Q9H400 NACAP3-201ENST00000552100 481 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 CKAP2P1-201ENST00000555477 2049 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC245505.1-201ENST00000556398 224 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AL158032.1-201ENST00000605401 106 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC008945.2-201ENST00000606056 604 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC092954.2-201ENST00000609103 430 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 AL158209.2-201ENST00000619266 216 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LIME1Q9H400 U6.114-201ENST00000636407 96 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
LIME1Q9H400 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC092593.1-201ENST00000515413 1815 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC006020.1-201ENST00000420179 1854 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 CDC27P3-201ENST00000635418 1910 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
LIME1Q9H400 MIR412-201ENST00000362142 91 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 SNORD3E-201ENST00000362899 217 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU1-105P-201ENST00000363470 161 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU6-371P-201ENST00000364283 108 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 MIR504-201ENST00000385065 83 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
LIME1Q9H400 AL356057.3-201ENST00000402607 340 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 SNORA3.2-201ENST00000408221 125 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU2-29P-201ENST00000410423 189 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
LIME1Q9H400 MTCO3P30-201ENST00000426425 670 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC009414.1-201ENST00000427200 443 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AL669831.1-202ENST00000428504 417 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 GTF2IP13-201ENST00000438487 386 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.37□□□□□ -2.03
LIME1Q9H400 CACYBPP2-201ENST00000453625 678 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU7-63P-201ENST00000459054 62 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RN7SL499P-201ENST00000481141 276 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC082651.2-201ENST00000496833 166 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 MTCO3P9-201ENST00000506989 781 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RAC1P5-201ENST00000512182 576 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU6-506P-201ENST00000516553 94 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU6-572P-201ENST00000516724 80 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RNU6-56P-201ENST00000516986 93 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.37□□□□□ -2.03
LIME1Q9H400 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.37□□□□□ -2.03
LIME1Q9H400 MTATP6P3-201ENST00000581686 676 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC012507.3-201ENST00000603556 477 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AL138889.2-201ENST00000603883 242 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC008536.2-201ENST00000607284 349 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC013562.2-201ENST00000611632 603 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 RMST_4.1-201ENST00000616886 107 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 MIR6134-201ENST00000617606 109 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC139792.3-201ENST00000623525 224 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC090617.7-201ENST00000623952 126 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 AC092608.2-201ENST00000624427 218 ntBASIC2.37□□□□□ -2.03
LIME1Q9H400 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
LIME1Q9H400 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.37□□□□□ -2.03
LIME1Q9H400 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIME1Q9H400 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.37□□□□□ -2.03
LIME1Q9H400 ZNF519P1-201ENST00000449011 1626 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
LIME1Q9H400 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-552P-201ENST00000362869 119 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-1287P-201ENST00000362914 107 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 SNORD14B-201ENST00000364533 90 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms