Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-166P-201ENST00000384371 107 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 MIR591-201ENST00000385290 95 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 SNORA11.2-201ENST00000408318 127 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 NDUFS5P4-201ENST00000412983 318 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.73□□□□□ -1.81
NUP88Q99567 SKA2P1-201ENST00000425592 390 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 NDUFA5P4-201ENST00000436704 385 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.73□□□□□ -1.81
NUP88Q99567 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.73□□□□□ -1.81
NUP88Q99567 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.73□□□□□ -1.81
NUP88Q99567 MTATP6P7-201ENST00000453315 681 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 BTF3P15-201ENST00000455606 336 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 PPP1R2P5-201ENST00000457256 603 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AP001486.1-201ENST00000463339 476 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 HMGN1P12-201ENST00000499125 195 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.73□□□□□ -1.81
NUP88Q99567 AC046134.1-201ENST00000514454 666 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AC090136.1-201ENST00000520009 240 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.73□□□□□ -1.81
NUP88Q99567 AL163153.1-201ENST00000554223 283 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.73□□□□□ -1.81
NUP88Q99567 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.73□□□□□ -1.81
NUP88Q99567 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
NUP88Q99567 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NUP88Q99567 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
NUP88Q99567 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NUP88Q99567 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.72□□□□□ -1.81
NUP88Q99567 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.72□□□□□ -1.81
NUP88Q99567 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
NUP88Q99567 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NUP88Q99567 MIR422A-201ENST00000362286 90 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 RNU6-845P-201ENST00000362578 103 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 Y_RNA.70-201ENST00000362886 110 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 MIR450B-201ENST00000401182 78 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AL592148.1-201ENST00000413568 445 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.72□□□□□ -1.81
NUP88Q99567 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.72□□□□□ -1.81
NUP88Q99567 IFNA20P-201ENST00000436840 528 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 S100A11P2-201ENST00000467589 312 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AL049873.1-201ENST00000480540 376 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AC011005.2-201ENST00000487324 359 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.72□□□□□ -1.81
NUP88Q99567 RNU6-507P-201ENST00000516045 100 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 SNORA64.4-201ENST00000516632 81 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.72□□□□□ -1.81
NUP88Q99567 NACAP3-201ENST00000552100 481 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 HMGN2P15-201ENST00000585707 270 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AL451007.1-201ENST00000595491 289 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AL137843.1-201ENST00000605078 385 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NUP88Q99567 AL355073.2-201ENST00000612106 557 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 AC005858.4-201ENST00000623191 700 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 ADAM3A-203ENST00000461344 2157 ntBASIC3.72□□□□□ -1.81
NUP88Q99567 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
NUP88Q99567 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.71□□□□□ -1.82
NUP88Q99567 RNU6-1009P-201ENST00000390996 107 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 RNU6-1148P-201ENST00000410992 104 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.71□□□□□ -1.82
NUP88Q99567 AC245291.1-201ENST00000419501 328 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 HMGB1P9-201ENST00000429856 646 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.71□□□□□ -1.82
NUP88Q99567 AL365400.1-201ENST00000431854 640 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.71□□□□□ -1.82
NUP88Q99567 snoU109.2-201ENST00000459316 135 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 AC087884.1-201ENST00000469738 328 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 AC117503.1-201ENST00000472241 394 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 RPS27AP10-201ENST00000496103 208 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.71□□□□□ -1.82
NUP88Q99567 AC008885.1-201ENST00000514930 301 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 RNU6-703P-201ENST00000516946 107 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.71□□□□□ -1.82
NUP88Q99567 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
NUP88Q99567 RNU6-85P-201ENST00000605989 107 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 uc_338.25-201ENST00000613756 156 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 RMST_4.1-201ENST00000616886 107 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 U2.21-201ENST00000637295 81 ntBASIC3.71□□□□□ -1.82
NUP88Q99567 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
NUP88Q99567 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.71□□□□□ -1.82
NUP88Q99567 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.71□□□□□ -1.82
NUP88Q99567 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.71□□□□□ -1.82
NUP88Q99567 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NUP88Q99567 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
NUP88Q99567 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
NUP88Q99567 Y_RNA.167-201ENST00000363735 109 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 RNU6-831P-201ENST00000384548 107 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 RNU1-101P-201ENST00000391171 127 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 UBA52P6-201ENST00000399822 382 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 RNU2-3P-201ENST00000410144 191 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 CYCSP33-201ENST00000414485 327 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 ARF4P2-201ENST00000430209 526 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.7□□□□□ -1.82
NUP88Q99567 NDUFB1P2-201ENST00000449477 176 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AL136097.1-201ENST00000456945 913 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 SNORA59A-201ENST00000459326 152 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 RPL27AP5-201ENST00000469428 449 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 TRBVA-201ENST00000498804 316 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 AC104027.1-201ENST00000521887 300 ntBASIC3.7□□□□□ -1.82
NUP88Q99567 LINC00933-203ENST00000559812 219 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms