Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC244453.4-201ENST00000419150 388 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC246680.2-201ENST00000422106 389 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MTCO1P53-201ENST00000441633 699 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL441985.1-201ENST00000457727 251 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP000403.1-201ENST00000603349 851 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL357094.1-201ENST00000603845 844 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP001033.2-201ENST00000609701 1003 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC010133.1-201ENST00000615809 842 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNU6-220P-201ENST00000390919 107 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNU6-952P-201ENST00000391164 108 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNA5SP465-201ENST00000391195 109 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC016769.3-201ENST00000396562 315 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC009310.1-201ENST00000414414 451 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP1S2P1-201ENST00000457344 379 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 uc_338.15-201ENST00000615470 191 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 U2.21-201ENST00000637295 81 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 U6.101-201ENST00000637707 76 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MIR518D-201ENST00000385014 87 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MTATP6P27-201ENST00000416987 621 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 Z95118.1-201ENST00000421372 247 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNA5SP112-201ENST00000515937 99 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL160236.1-201ENST00000556317 195 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AGGF1P5-201ENST00000567900 919 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 U6.112-201ENST00000384129 70 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC104651.1-201ENST00000427559 735 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC005345.1-201ENST00000431868 217 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 USP12PX-201ENST00000432383 1057 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MTND4P25-201ENST00000441039 533 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 HMGN1P10-201ENST00000474557 553 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC138915.2-201ENST00000569776 97 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MIR3122-201ENST00000577243 73 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC073544.2-201ENST00000601155 540 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MIR5739-201ENST00000619803 80 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC080188.3-201ENST00000624842 748 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 NACAP2-201ENST00000318548 624 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNU4-38P-201ENST00000364472 129 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC016831.2-201ENST00000417179 352 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 MTCO3P1-205ENST00000422088 832 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC104563.1-201ENST00000476147 376 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC093852.1-201ENST00000503587 266 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC093281.2-201ENST00000510153 597 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 HSPE1P4-201ENST00000550617 308 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP001542.1-201ENST00000591314 200 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC009974.1-201ENST00000608881 455 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC006213.5-201ENST00000619673 288 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC245060.5-201ENST00000610778 3293 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNU4-42P-201ENST00000364738 142 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 RNU6-203P-201ENST00000384038 104 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL079342.2-201ENST00000403367 482 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 NCOR1P3-201ENST00000420479 303 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC093155.1-201ENST00000440164 826 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC098483.2-201ENST00000603158 454 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL161423.1-201ENST00000613700 262 ntBASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.32□□□□□ -2.36
SYNE1Q8NF91 AC073544.1-201ENST00000600110 1595 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 SNORD14B-201ENST00000364533 90 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 RNU6-140P-201ENST00000384566 108 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 AC097463.2-201ENST00000421074 142 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 BPY2DP-201ENST00000422208 265 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 HMGN2P10-201ENST00000448085 265 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 KATNBL1P6-201ENST00000453433 915 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 AC109329.1-201ENST00000518744 317 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 AL355598.1-201ENST00000604169 202 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC0.31□□□□□ -2.36
SYNE1Q8NF91 DUSP12P1-201ENST00000612874 516 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 AC092125.1-201ENST00000562568 1995 ntBASIC0.31□□□□□ -2.36
SYNE1Q8NF91 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.31□□□□□ -2.36
SYNE1Q8NF91 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.31□□□□□ -2.36
SYNE1Q8NF91 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 180.2 ms