Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MTND4LP5-201ENST00000605152 292 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AC007619.2-201ENST00000605743 379 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AC006329.2-201ENST00000611491 394 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.84□□□□□ -1.79
USP39Q53GS9 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.84□□□□□ -1.79
USP39Q53GS9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 UBE3AP2-201ENST00000429033 2259 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 RNU6-989P-201ENST00000362756 107 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 Y_RNA.151-201ENST00000363566 112 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 RNU6-1303P-201ENST00000364841 107 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 RNVU1-14-201ENST00000384770 164 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 MIR517A-201ENST00000385001 87 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 AC110754.1-201ENST00000399740 601 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 RNU6-293P-201ENST00000411259 106 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 HMGB1P37-201ENST00000439613 609 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.83□□□□□ -1.8
USP39Q53GS9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 AC025465.3-201ENST00000510570 311 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.83□□□□□ -1.8
USP39Q53GS9 AC040926.1-201ENST00000530195 238 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC109446.1-201ENST00000566172 220 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 MIR3922-201ENST00000585192 84 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC067852.3-201ENST00000589177 561 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.83□□□□□ -1.8
USP39Q53GS9 AC012119.1-201ENST00000603184 222 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 ELOCP5-201ENST00000604924 333 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC002044.1-201ENST00000606707 158 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC006023.2-201ENST00000609916 167 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.83□□□□□ -1.8
USP39Q53GS9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.83□□□□□ -1.8
USP39Q53GS9 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
USP39Q53GS9 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.83□□□□□ -1.8
USP39Q53GS9 ZNF72P-201ENST00000425869 1908 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 AC008669.1-201ENST00000565823 2178 ntBASIC3.83□□□□□ -1.8
USP39Q53GS9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP39Q53GS9 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.83□□□□□ -1.8
USP39Q53GS9 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.83□□□□□ -1.8
USP39Q53GS9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP39Q53GS9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP39Q53GS9 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP39Q53GS9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
USP39Q53GS9 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
USP39Q53GS9 Y_RNA.117-201ENST00000363294 101 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 RNU4-42P-201ENST00000364738 142 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 Y_RNA.314-201ENST00000365114 102 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 Y_RNA.518-201ENST00000384552 113 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 MIR1302-6-201ENST00000408466 90 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.82□□□□□ -1.8
USP39Q53GS9 AC092447.6-201ENST00000414578 210 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 BX276092.3-201ENST00000424182 230 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 UBE2V1P4-201ENST00000425374 344 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.82□□□□□ -1.8
USP39Q53GS9 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.82□□□□□ -1.8
USP39Q53GS9 AL159987.2-201ENST00000432754 307 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC083863.1-201ENST00000438811 231 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 SNORD105B-201ENST00000458770 79 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 RPL21P104-201ENST00000464143 478 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 FO393415.2-201ENST00000480085 343 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 RPS4XP13-201ENST00000483219 789 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC108860.1-201ENST00000484521 383 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.82□□□□□ -1.8
USP39Q53GS9 AC005798.1-201ENST00000513715 387 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.82□□□□□ -1.8
USP39Q53GS9 HMGN1P28-201ENST00000521340 364 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC007991.1-201ENST00000522680 631 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.82□□□□□ -1.8
USP39Q53GS9 MIR3690-201ENST00000580266 75 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AC174048.1-201ENST00000603389 144 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 AL591424.2-201ENST00000617023 128 ntBASIC3.82□□□□□ -1.8
USP39Q53GS9 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.82□□□□□ -1.8
USP39Q53GS9 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.82□□□□□ -1.8
USP39Q53GS9 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
USP39Q53GS9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.82□□□□□ -1.8
USP39Q53GS9 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.81□□□□□ -1.8
USP39Q53GS9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
USP39Q53GS9 AL157777.2-201ENST00000258070 137 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNU6-600P-201ENST00000362524 99 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 Y_RNA.64-201ENST00000362845 102 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNU6-371P-201ENST00000364283 108 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNA5SP51-201ENST00000364750 119 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNU6-1329P-201ENST00000365664 107 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.81□□□□□ -1.8
USP39Q53GS9 Y_RNA.477-201ENST00000384352 108 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNU6-45P-201ENST00000384471 107 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 MIR199A2-201ENST00000385289 110 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 AL138885.1-201ENST00000405921 675 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RNU6-174P-201ENST00000410406 106 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RPL17P19-201ENST00000489069 552 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RPL7P47-201ENST00000497299 556 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms