Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC023632.1-201ENST00000518463 375 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC0.79□□□□□ -2.28
FOXA3P55318 AC044913.1-201ENST00000557200 430 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC093249.1-201ENST00000567049 203 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC090330.1-201ENST00000588646 764 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC0.79□□□□□ -2.28
FOXA3P55318 ZNF92P2-201ENST00000600543 1059 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 CLIC4P2-201ENST00000601934 717 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 KATNBL1P5-201ENST00000605015 517 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC008759.3-201ENST00000613300 508 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 uc_338.12-201ENST00000616344 181 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AL357080.1-201ENST00000617394 239 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC253576.2-201ENST00000618815 580 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.79□□□□□ -2.28
FOXA3P55318 AC241585.2-209ENST00000638217 143 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
FOXA3P55318 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
FOXA3P55318 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
FOXA3P55318 MIR302D-201ENST00000362275 68 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RNU6-97P-201ENST00000363387 104 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RNU6-792P-201ENST00000363490 107 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RNU6-1187P-201ENST00000364771 110 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AL133475.1-201ENST00000404414 305 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 MIR1261-201ENST00000408659 82 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 MIR1267-201ENST00000408723 78 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC139712.2-201ENST00000424302 339 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RPS27P16-201ENST00000425758 201 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA3P55318 AL135790.2-201ENST00000437701 267 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC087477.1-201ENST00000465747 340 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RPL30P12-201ENST00000474666 353 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC021382.1-201ENST00000483523 359 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC023194.1-201ENST00000493084 308 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC117532.1-201ENST00000514638 323 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 RNVU1-2-201ENST00000516326 135 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA3P55318 AP003392.2-201ENST00000527269 208 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA3P55318 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA3P55318 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA3P55318 MIR4421-201ENST00000578133 69 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.78□□□□□ -2.28
FOXA3P55318 SNORD114-21-201ENST00000606412 72 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 AC098614.4-201ENST00000607601 462 ntBASIC0.78□□□□□ -2.28
FOXA3P55318 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.78□□□□□ -2.28
FOXA3P55318 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
FOXA3P55318 RNU1-17P-201ENST00000363022 152 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 Y_RNA.99-201ENST00000363138 105 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 RNU6-457P-201ENST00000363999 107 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 RNU6-432P-201ENST00000384196 109 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.77□□□□□ -2.29
FOXA3P55318 DEFB130D-201ENST00000426866 237 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC092634.2-201ENST00000428146 1010 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.77□□□□□ -2.29
FOXA3P55318 COX7BP2-201ENST00000437976 242 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.77□□□□□ -2.29
FOXA3P55318 AC104058.1-201ENST00000448028 297 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 MRPL42P4-201ENST00000453267 443 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC0.77□□□□□ -2.29
FOXA3P55318 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.77□□□□□ -2.29
FOXA3P55318 AC022616.8-201ENST00000533569 253 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC0.77□□□□□ -2.29
FOXA3P55318 AC090115.3-201ENST00000553218 849 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 LINC00557-201ENST00000563184 1279 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC122134.1-202ENST00000569111 1201 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 NIFKP6-201ENST00000598115 845 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC073410.2-201ENST00000603240 332 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AL512598.1-201ENST00000610158 273 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AC010975.3-201ENST00000618727 978 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 AL445264.1-201ENST00000621719 171 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.77□□□□□ -2.29
FOXA3P55318 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
FOXA3P55318 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
FOXA3P55318 SNORD114-19-201ENST00000363072 75 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 RNU6-414P-201ENST00000363705 104 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
FOXA3P55318 TPMTP2-201ENST00000414372 726 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.76□□□□□ -2.29
FOXA3P55318 MTCO3P5-201ENST00000433620 714 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 SEPT7P5-201ENST00000434048 306 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AL121890.1-201ENST00000435457 205 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 GDI2P2-201ENST00000445131 608 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AL035666.1-201ENST00000446195 348 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 DUXAP8-207ENST00000456786 622 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 RN7SKP210-201ENST00000459176 261 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AP001025.1-201ENST00000486139 332 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AC010409.1-201ENST00000487382 476 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 RPL36AP21-201ENST00000490372 323 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 YWHAEP4-201ENST00000505390 198 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.76□□□□□ -2.29
FOXA3P55318 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC0.76□□□□□ -2.29
FOXA3P55318 TRAV32-201ENST00000553993 340 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 SNORA77B-201ENST00000578179 125 ntBASIC0.76□□□□□ -2.29
FOXA3P55318 AL078604.3-201ENST00000615580 211 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms