Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.1□□□□□ -1.75
MRE11P49959 AC104472.2-201ENST00000469035 601 ntBASIC4.1□□□□□ -1.75
MRE11P49959 AC117503.1-201ENST00000472241 394 ntBASIC4.1□□□□□ -1.75
MRE11P49959 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.1□□□□□ -1.75
MRE11P49959 AL135752.1-201ENST00000479477 471 ntBASIC4.1□□□□□ -1.75
MRE11P49959 UBE2CP3-201ENST00000502715 450 ntBASIC4.1□□□□□ -1.75
MRE11P49959 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MRE11P49959 RNU6-352P-201ENST00000516908 107 ntBASIC4.1□□□□□ -1.75
MRE11P49959 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.1□□□□□ -1.75
MRE11P49959 RANP9-201ENST00000519957 271 ntBASIC4.1□□□□□ -1.75
MRE11P49959 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.1□□□□□ -1.75
MRE11P49959 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.1□□□□□ -1.75
MRE11P49959 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.1□□□□□ -1.75
MRE11P49959 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.1□□□□□ -1.75
MRE11P49959 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.1□□□□□ -1.75
MRE11P49959 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.1□□□□□ -1.75
MRE11P49959 AC005344.1-201ENST00000613391 459 ntBASIC4.1□□□□□ -1.75
MRE11P49959 MIR6128-201ENST00000615528 109 ntBASIC4.1□□□□□ -1.75
MRE11P49959 AC006386.2-201ENST00000624491 75 ntBASIC4.1□□□□□ -1.75
MRE11P49959 AC012005.1-201ENST00000624575 75 ntBASIC4.1□□□□□ -1.75
MRE11P49959 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
MRE11P49959 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MRE11P49959 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MRE11P49959 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MRE11P49959 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MRE11P49959 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
MRE11P49959 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
MRE11P49959 AC117470.1-201ENST00000381974 330 ntBASIC4.09□□□□□ -1.75
MRE11P49959 SNORD3H-201ENST00000384486 214 ntBASIC4.09□□□□□ -1.75
MRE11P49959 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.09□□□□□ -1.75
MRE11P49959 RPL7P37-201ENST00000425095 738 ntBASIC4.09□□□□□ -1.75
MRE11P49959 RPL23AP69-201ENST00000431134 458 ntBASIC4.09□□□□□ -1.75
MRE11P49959 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.09□□□□□ -1.75
MRE11P49959 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.09□□□□□ -1.75
MRE11P49959 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.09□□□□□ -1.75
MRE11P49959 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.09□□□□□ -1.75
MRE11P49959 AC087884.1-201ENST00000469738 328 ntBASIC4.09□□□□□ -1.75
MRE11P49959 KC877373.1-201ENST00000479066 408 ntBASIC4.09□□□□□ -1.75
MRE11P49959 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.09□□□□□ -1.75
MRE11P49959 AC097473.1-201ENST00000508142 408 ntBASIC4.09□□□□□ -1.75
MRE11P49959 AC116337.1-201ENST00000509680 687 ntBASIC4.09□□□□□ -1.75
MRE11P49959 RNA5SP164-201ENST00000516533 110 ntBASIC4.09□□□□□ -1.75
MRE11P49959 RNU6-677P-201ENST00000516914 101 ntBASIC4.09□□□□□ -1.75
MRE11P49959 OR4H12P-201ENST00000556269 907 ntBASIC4.09□□□□□ -1.75
MRE11P49959 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MRE11P49959 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
MRE11P49959 AC005183.1-201ENST00000603687 1979 ntBASIC4.09□□□□□ -1.76
MRE11P49959 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.09□□□□□ -1.76
MRE11P49959 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
MRE11P49959 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
MRE11P49959 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MRE11P49959 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MRE11P49959 RNA5SP295-201ENST00000362655 121 ntBASIC4.08□□□□□ -1.76
MRE11P49959 SNORD3E-201ENST00000362899 217 ntBASIC4.08□□□□□ -1.76
MRE11P49959 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 SNORA75B-201ENST00000384053 137 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RNU6-574P-201ENST00000384265 107 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RNU6-1106P-201ENST00000390845 107 ntBASIC4.08□□□□□ -1.76
MRE11P49959 Y_RNA.605-201ENST00000410577 105 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RNA5SP120-201ENST00000410900 112 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RPS12P24-201ENST00000412619 387 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.08□□□□□ -1.76
MRE11P49959 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.08□□□□□ -1.76
MRE11P49959 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 COTL1P1-201ENST00000422309 375 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AC018865.2-201ENST00000423631 129 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AL590632.1-201ENST00000424289 371 ntBASIC4.08□□□□□ -1.76
MRE11P49959 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 AC009969.1-201ENST00000438726 172 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AL049641.1-201ENST00000441055 1948 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RPL21P23-201ENST00000446654 460 ntBASIC4.08□□□□□ -1.76
MRE11P49959 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.08□□□□□ -1.76
MRE11P49959 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MRE11P49959 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 Y_RNA.673-201ENST00000516306 88 ntBASIC4.08□□□□□ -1.76
MRE11P49959 RNU6-1332P-201ENST00000516666 104 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AC009902.1-201ENST00000519351 183 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.08□□□□□ -1.76
MRE11P49959 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 AC087499.8-201ENST00000578406 226 ntBASIC4.08□□□□□ -1.76
MRE11P49959 MIR4680-201ENST00000580906 66 ntBASIC4.08□□□□□ -1.76
MRE11P49959 HMGN2P28-201ENST00000606102 262 ntBASIC4.08□□□□□ -1.76
MRE11P49959 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 AC083806.3-201ENST00000614016 455 ntBASIC4.08□□□□□ -1.76
MRE11P49959 ATP5A1P2-202ENST00000616464 443 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AC022418.1-201ENST00000624118 445 ntBASIC4.08□□□□□ -1.76
MRE11P49959 AC138305.3-201ENST00000624988 240 ntBASIC4.08□□□□□ -1.76
MRE11P49959 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.08□□□□□ -1.76
MRE11P49959 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.08□□□□□ -1.76
MRE11P49959 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MRE11P49959 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MRE11P49959 RNU6-890P-201ENST00000384121 107 ntBASIC4.07□□□□□ -1.76
MRE11P49959 MCFD2P1-201ENST00000417812 300 ntBASIC4.07□□□□□ -1.76
MRE11P49959 RPL23AP82-202ENST00000427528 469 ntBASIC4.07□□□□□ -1.76
MRE11P49959 VDAC1P3-201ENST00000434069 851 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms