Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PARP1P2-201ENST00000556806 195 ntBASIC4.37□□□□□ -1.71
LIG3P49916 LINC00933-203ENST00000559812 219 ntBASIC4.37□□□□□ -1.71
LIG3P49916 RPL23AP97-201ENST00000568955 471 ntBASIC4.37□□□□□ -1.71
LIG3P49916 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.37□□□□□ -1.71
LIG3P49916 MIR3939-201ENST00000582614 106 ntBASIC4.37□□□□□ -1.71
LIG3P49916 AC005357.1-201ENST00000588399 301 ntBASIC4.37□□□□□ -1.71
LIG3P49916 AL590392.1-201ENST00000604960 446 ntBASIC4.37□□□□□ -1.71
LIG3P49916 ARF4P1-201ENST00000605447 541 ntBASIC4.37□□□□□ -1.71
LIG3P49916 AC011373.1-201ENST00000607270 237 ntBASIC4.37□□□□□ -1.71
LIG3P49916 AC130454.1-201ENST00000622948 401 ntBASIC4.37□□□□□ -1.71
LIG3P49916 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
LIG3P49916 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
LIG3P49916 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
LIG3P49916 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.36□□□□□ -1.71
LIG3P49916 Y_RNA.222-201ENST00000364264 102 ntBASIC4.36□□□□□ -1.71
LIG3P49916 RNU1-132P-201ENST00000364300 164 ntBASIC4.36□□□□□ -1.71
LIG3P49916 Y_RNA.447-201ENST00000384184 113 ntBASIC4.36□□□□□ -1.71
LIG3P49916 MIR3074-201ENST00000384885 81 ntBASIC4.36□□□□□ -1.71
LIG3P49916 MT-TR-201ENST00000387439 65 ntBASIC4.36□□□□□ -1.71
LIG3P49916 AP000275.1-201ENST00000411943 390 ntBASIC4.36□□□□□ -1.71
LIG3P49916 HMGN2P30-201ENST00000423237 256 ntBASIC4.36□□□□□ -1.71
LIG3P49916 MTCO3P29-201ENST00000432119 779 ntBASIC4.36□□□□□ -1.71
LIG3P49916 RPL21P104-201ENST00000464143 478 ntBASIC4.36□□□□□ -1.71
LIG3P49916 RPL35AP15-201ENST00000468042 339 ntBASIC4.36□□□□□ -1.71
LIG3P49916 UBE2CP3-201ENST00000502715 450 ntBASIC4.36□□□□□ -1.71
LIG3P49916 TRAV8-5-201ENST00000537369 341 ntBASIC4.36□□□□□ -1.71
LIG3P49916 H3F3AP1-201ENST00000559984 334 ntBASIC4.36□□□□□ -1.71
LIG3P49916 AC104581.2-201ENST00000572227 430 ntBASIC4.36□□□□□ -1.71
LIG3P49916 IPO5P1-202ENST00000600039 287 ntBASIC4.36□□□□□ -1.71
LIG3P49916 AC110741.2-201ENST00000605278 268 ntBASIC4.36□□□□□ -1.71
LIG3P49916 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.36□□□□□ -1.71
LIG3P49916 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIG3P49916 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.36□□□□□ -1.71
LIG3P49916 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
LIG3P49916 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.35□□□□□ -1.71
LIG3P49916 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIG3P49916 Y_RNA.19-201ENST00000362462 99 ntBASIC4.35□□□□□ -1.71
LIG3P49916 RNU6-527P-201ENST00000363425 104 ntBASIC4.35□□□□□ -1.71
LIG3P49916 U3.13-201ENST00000364804 214 ntBASIC4.35□□□□□ -1.71
LIG3P49916 SNORA12.2-201ENST00000391040 156 ntBASIC4.35□□□□□ -1.71
LIG3P49916 MIR190B-201ENST00000401119 79 ntBASIC4.35□□□□□ -1.71
LIG3P49916 RN7SKP177-201ENST00000410567 355 ntBASIC4.35□□□□□ -1.71
LIG3P49916 SNORA74C-2-201ENST00000411179 201 ntBASIC4.35□□□□□ -1.71
LIG3P49916 RPL23AP26-201ENST00000412728 464 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.35□□□□□ -1.71
LIG3P49916 SNORA43.2-201ENST00000516652 128 ntBASIC4.35□□□□□ -1.71
LIG3P49916 Y_RNA.706-201ENST00000516933 99 ntBASIC4.35□□□□□ -1.71
LIG3P49916 RNU6-897P-201ENST00000517135 105 ntBASIC4.35□□□□□ -1.71
LIG3P49916 CASP1P1-201ENST00000526345 212 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIG3P49916 AC023157.2-201ENST00000540596 141 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.35□□□□□ -1.71
LIG3P49916 MIR3690-201ENST00000580266 75 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AC006557.5-201ENST00000603126 811 ntBASIC4.35□□□□□ -1.71
LIG3P49916 MIR6716-201ENST00000613413 80 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AL021997.2-201ENST00000615674 271 ntBASIC4.35□□□□□ -1.71
LIG3P49916 AL731566.2-201ENST00000618971 317 ntBASIC4.35□□□□□ -1.71
LIG3P49916 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
LIG3P49916 Z75746.1-201ENST00000440243 2080 ntBASIC4.34□□□□□ -1.71
LIG3P49916 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.34□□□□□ -1.71
LIG3P49916 FAM35BP-202ENST00000497389 3337 ntBASIC4.34□□□□□ -1.71
LIG3P49916 Y_RNA.64-201ENST00000362845 102 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RNA5SP175-201ENST00000364275 119 ntBASIC4.34□□□□□ -1.71
LIG3P49916 Y_RNA.257-201ENST00000364596 102 ntBASIC4.34□□□□□ -1.71
LIG3P49916 Y_RNA.350-201ENST00000365409 98 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RNA5SP366-201ENST00000365454 123 ntBASIC4.34□□□□□ -1.71
LIG3P49916 Z98749.2-208ENST00000381646 500 ntBASIC4.34□□□□□ -1.71
LIG3P49916 MIR1911-201ENST00000410783 80 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RHEBP3-201ENST00000411920 351 ntBASIC4.34□□□□□ -1.71
LIG3P49916 CRYBB2P1-203ENST00000415709 538 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RPS6P12-201ENST00000432491 726 ntBASIC4.34□□□□□ -1.71
LIG3P49916 AL132765.1-201ENST00000434165 553 ntBASIC4.34□□□□□ -1.71
LIG3P49916 NUTF2P3-201ENST00000448540 384 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RNU6-1132P-201ENST00000459214 107 ntBASIC4.34□□□□□ -1.71
LIG3P49916 AC105137.1-201ENST00000484355 562 ntBASIC4.34□□□□□ -1.71
LIG3P49916 AC091167.1-201ENST00000492017 396 ntBASIC4.34□□□□□ -1.71
LIG3P49916 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.34□□□□□ -1.71
LIG3P49916 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.34□□□□□ -1.71
LIG3P49916 AC074250.1-201ENST00000511117 192 ntBASIC4.34□□□□□ -1.71
LIG3P49916 RNU7-175P-201ENST00000515915 61 ntBASIC4.34□□□□□ -1.71
LIG3P49916 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.34□□□□□ -1.71
LIG3P49916 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.34□□□□□ -1.71
LIG3P49916 AC024153.1-201ENST00000603103 365 ntBASIC4.34□□□□□ -1.71
LIG3P49916 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.34□□□□□ -1.71
LIG3P49916 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.34□□□□□ -1.71
LIG3P49916 U2.21-201ENST00000637295 81 ntBASIC4.34□□□□□ -1.71
LIG3P49916 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LIG3P49916 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
LIG3P49916 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
LIG3P49916 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.34□□□□□ -1.72
LIG3P49916 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.72
LIG3P49916 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.34□□□□□ -1.72
LIG3P49916 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
LIG3P49916 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIG3P49916 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms