Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.59□□□□□ -2.32
CUX1P39880 AC009518.2-201ENST00000418056 731 ntBASIC0.59□□□□□ -2.32
CUX1P39880 MTND2P9-201ENST00000422293 931 ntBASIC0.59□□□□□ -2.32
CUX1P39880 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.59□□□□□ -2.32
CUX1P39880 AL160275.3-201ENST00000423876 471 ntBASIC0.59□□□□□ -2.32
CUX1P39880 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.59□□□□□ -2.32
CUX1P39880 AL606489.2-201ENST00000433886 234 ntBASIC0.59□□□□□ -2.32
CUX1P39880 AL035666.1-201ENST00000446195 348 ntBASIC0.59□□□□□ -2.32
CUX1P39880 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.59□□□□□ -2.32
CUX1P39880 MTND5P8-201ENST00000449817 1083 ntBASIC0.59□□□□□ -2.32
CUX1P39880 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.59□□□□□ -2.32
CUX1P39880 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
CUX1P39880 MTCYBP16-201ENST00000509187 1129 ntBASIC0.59□□□□□ -2.32
CUX1P39880 RNA5SP404-201ENST00000517118 132 ntBASIC0.59□□□□□ -2.32
CUX1P39880 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.59□□□□□ -2.32
CUX1P39880 AC026271.5-201ENST00000577873 130 ntBASIC0.59□□□□□ -2.32
CUX1P39880 AC105224.1-201ENST00000587055 421 ntBASIC0.59□□□□□ -2.32
CUX1P39880 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.59□□□□□ -2.32
CUX1P39880 AL137246.1-201ENST00000607072 977 ntBASIC0.59□□□□□ -2.32
CUX1P39880 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.59□□□□□ -2.32
CUX1P39880 AC006213.4-201ENST00000616184 634 ntBASIC0.59□□□□□ -2.32
CUX1P39880 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.58□□□□□ -2.32
CUX1P39880 OR5T3-201ENST00000303059 1023 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
CUX1P39880 SNORD114-15-201ENST00000364687 72 ntBASIC0.58□□□□□ -2.32
CUX1P39880 RNA5SP240-201ENST00000365355 128 ntBASIC0.58□□□□□ -2.32
CUX1P39880 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
CUX1P39880 AC009310.1-201ENST00000414414 451 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AL035410.1-201ENST00000427409 427 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC024082.2-201ENST00000434771 238 ntBASIC0.58□□□□□ -2.32
CUX1P39880 FABP5P14-201ENST00000437273 393 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC112492.4-201ENST00000456549 352 ntBASIC0.58□□□□□ -2.32
CUX1P39880 SNORD124-201ENST00000459577 104 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.58□□□□□ -2.32
CUX1P39880 AC006518.2-201ENST00000542513 940 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC090115.3-201ENST00000553218 849 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC010900.2-201ENST00000604508 210 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AL391597.1-201ENST00000618707 694 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC013470.4-201ENST00000619978 986 ntBASIC0.58□□□□□ -2.32
CUX1P39880 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CUX1P39880 U3.8-201ENST00000363675 217 ntBASIC0.57□□□□□ -2.32
CUX1P39880 MIR10B-201ENST00000385011 110 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AC010099.3-201ENST00000423896 409 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.57□□□□□ -2.32
CUX1P39880 ACA64.5-201ENST00000516207 127 ntBASIC0.57□□□□□ -2.32
CUX1P39880 RNU4-77P-201ENST00000516692 156 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AP006587.4-201ENST00000526053 529 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AP003122.4-201ENST00000530980 758 ntBASIC0.57□□□□□ -2.32
CUX1P39880 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.57□□□□□ -2.32
CUX1P39880 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.57□□□□□ -2.32
CUX1P39880 FAM60CP-201ENST00000591086 664 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.57□□□□□ -2.32
CUX1P39880 MIR8074-201ENST00000615081 81 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AC073569.3-201ENST00000619055 682 ntBASIC0.57□□□□□ -2.32
CUX1P39880 MIR5739-201ENST00000619803 80 ntBASIC0.57□□□□□ -2.32
CUX1P39880 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CUX1P39880 RNU6-26P-201ENST00000383985 107 ntBASIC0.56□□□□□ -2.32
CUX1P39880 RNU6-167P-201ENST00000384292 106 ntBASIC0.56□□□□□ -2.32
CUX1P39880 RNU6-733P-201ENST00000410759 104 ntBASIC0.56□□□□□ -2.32
CUX1P39880 AC013410.2-201ENST00000422627 201 ntBASIC0.56□□□□□ -2.32
CUX1P39880 MED14P1-201ENST00000430517 648 ntBASIC0.56□□□□□ -2.32
CUX1P39880 snoU13.9-201ENST00000458927 103 ntBASIC0.56□□□□□ -2.32
CUX1P39880 AL133373.1-201ENST00000497098 94 ntBASIC0.56□□□□□ -2.32
CUX1P39880 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.56□□□□□ -2.32
CUX1P39880 AC022616.2-201ENST00000523185 300 ntBASIC0.56□□□□□ -2.32
CUX1P39880 AL359212.1-201ENST00000556608 614 ntBASIC0.56□□□□□ -2.32
CUX1P39880 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.56□□□□□ -2.32
CUX1P39880 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.56□□□□□ -2.32
CUX1P39880 AL589743.7-201ENST00000612637 233 ntBASIC0.56□□□□□ -2.32
CUX1P39880 U1.36-201ENST00000620684 176 ntBASIC0.56□□□□□ -2.32
CUX1P39880 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CUX1P39880 RNU1-36P-201ENST00000365130 165 ntBASIC0.55□□□□□ -2.32
CUX1P39880 MIR329-1-201ENST00000385028 80 ntBASIC0.55□□□□□ -2.32
CUX1P39880 MIR561-201ENST00000385216 97 ntBASIC0.55□□□□□ -2.32
CUX1P39880 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
CUX1P39880 MTCO1P56-201ENST00000401674 224 ntBASIC0.55□□□□□ -2.32
CUX1P39880 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.55□□□□□ -2.32
CUX1P39880 AC096649.2-201ENST00000416186 393 ntBASIC0.55□□□□□ -2.32
CUX1P39880 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.55□□□□□ -2.32
CUX1P39880 RPL7P29-201ENST00000437151 728 ntBASIC0.55□□□□□ -2.32
CUX1P39880 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.55□□□□□ -2.32
CUX1P39880 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CUX1P39880 AC009233.1-201ENST00000616477 371 ntBASIC0.55□□□□□ -2.32
CUX1P39880 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.55□□□□□ -2.32
CUX1P39880 uc_338.22-201ENST00000622722 187 ntBASIC0.55□□□□□ -2.32
CUX1P39880 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.55□□□□□ -2.32
CUX1P39880 DBF4P1-201ENST00000412976 1892 ntBASIC0.55□□□□□ -2.32
CUX1P39880 RNU6-271P-201ENST00000363858 105 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AC097463.2-201ENST00000421074 142 ntBASIC0.54□□□□□ -2.32
CUX1P39880 PIGFP2-201ENST00000421400 651 ntBASIC0.54□□□□□ -2.32
CUX1P39880 UBE2V1P4-201ENST00000425374 344 ntBASIC0.54□□□□□ -2.32
CUX1P39880 snoU13.19-201ENST00000459148 104 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AC092757.1-201ENST00000467293 467 ntBASIC0.54□□□□□ -2.32
CUX1P39880 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC0.54□□□□□ -2.32
CUX1P39880 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.54□□□□□ -2.32
CUX1P39880 AC023158.1-201ENST00000561632 1025 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AC021171.1-201ENST00000603137 706 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AP000238.1-201ENST00000608759 426 ntBASIC0.54□□□□□ -2.32
CUX1P39880 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
CUX1P39880 MIR32-201ENST00000384965 70 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms