Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL583843.1-201ENST00000456070 346 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC007182.2-201ENST00000489251 402 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC079804.2-201ENST00000490376 200 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 RNU7-193P-201ENST00000516723 65 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC079598.5-201ENST00000547460 117 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC012435.1-202ENST00000568772 240 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 RPS3AP23-202ENST00000574601 686 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 MIR1273C-201ENST00000578669 77 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.03□□□□□ -2.08
CLDN9O95484 AC068276.1-201ENST00000605793 379 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC006927.3-201ENST00000638789 384 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.02□□□□□ -2.09
CLDN9O95484 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CLDN9O95484 HSPE1P11-201ENST00000339579 310 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CLDN9O95484 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.02□□□□□ -2.09
CLDN9O95484 RNU6-858P-201ENST00000362436 107 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 RNU1-72P-201ENST00000362976 153 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 SNORD56.2-201ENST00000363242 71 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 RNU5F-7P-201ENST00000363696 115 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 SNORA75B-201ENST00000384053 137 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 SNORD115.1-201ENST00000391109 76 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 SNORD23.1-201ENST00000408212 104 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 RNA5SP270-201ENST00000411361 118 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CLDN9O95484 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC119618.1-201ENST00000434191 222 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AL021397.1-201ENST00000451806 248 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.02□□□□□ -2.09
CLDN9O95484 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.02□□□□□ -2.09
CLDN9O95484 AP003122.4-201ENST00000530980 758 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC025678.1-201ENST00000567861 338 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 MIR5697-201ENST00000578045 78 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 BNIP3P8-201ENST00000597863 560 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AC008751.2-201ENST00000597885 980 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AL359999.1-201ENST00000604513 294 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AL355297.2-201ENST00000604792 129 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AL158032.1-201ENST00000605401 106 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CLDN9O95484 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.02□□□□□ -2.09
CLDN9O95484 AL161423.1-201ENST00000613700 262 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 U4atac.1-201ENST00000618345 95 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 MIR5739-201ENST00000619803 80 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 AC024940.5-201ENST00000622889 474 ntBASIC2.02□□□□□ -2.09
CLDN9O95484 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CLDN9O95484 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CLDN9O95484 ZNF658B-202ENST00000615961 3375 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.01□□□□□ -2.09
CLDN9O95484 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.01□□□□□ -2.09
CLDN9O95484 AC138393.1-203ENST00000327086 343 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 RNU6-500P-201ENST00000362349 107 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 SNORA72.3-201ENST00000365074 132 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CLDN9O95484 CIR1P3-201ENST00000405137 479 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 FTH1P15-201ENST00000406984 280 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AC016831.2-201ENST00000417179 352 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AL356320.1-201ENST00000429616 163 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AL591806.2-201ENST00000433122 173 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.01□□□□□ -2.09
CLDN9O95484 AC003071.1-201ENST00000451219 789 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 SNORA3.4-201ENST00000515969 96 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 RNU6-415P-201ENST00000516252 97 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AP003181.2-201ENST00000528941 181 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 OR5B19P-201ENST00000531766 928 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.01□□□□□ -2.09
CLDN9O95484 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.01□□□□□ -2.09
CLDN9O95484 AC002400.1-201ENST00000569310 726 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AC234772.3-201ENST00000602277 528 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.01□□□□□ -2.09
CLDN9O95484 AC016727.1-205ENST00000605437 569 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 AP002360.4-201ENST00000606980 481 ntBASIC2.01□□□□□ -2.09
CLDN9O95484 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.01□□□□□ -2.09
CLDN9O95484 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CLDN9O95484 AL596028.1-201ENST00000326971 197 ntBASIC2□□□□□ -2.09
CLDN9O95484 SNORA51.11-201ENST00000384442 131 ntBASIC2□□□□□ -2.09
CLDN9O95484 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2□□□□□ -2.09
CLDN9O95484 AC011233.1-201ENST00000422812 283 ntBASIC2□□□□□ -2.09
CLDN9O95484 AC007283.2-201ENST00000424739 197 ntBASIC2□□□□□ -2.09
CLDN9O95484 AL593851.1-201ENST00000426171 157 ntBASIC2□□□□□ -2.09
CLDN9O95484 RPL7P34-201ENST00000433316 712 ntBASIC2□□□□□ -2.09
CLDN9O95484 AL512286.1-201ENST00000439244 400 ntBASIC2□□□□□ -2.09
CLDN9O95484 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2□□□□□ -2.09
CLDN9O95484 RPL23AP7-203ENST00000449021 469 ntBASIC2□□□□□ -2.09
CLDN9O95484 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2□□□□□ -2.09
CLDN9O95484 ZNF114P1-201ENST00000453500 292 ntBASIC2□□□□□ -2.09
CLDN9O95484 RNU6-717P-201ENST00000459076 104 ntBASIC2□□□□□ -2.09
CLDN9O95484 AC010587.1-201ENST00000505809 469 ntBASIC2□□□□□ -2.09
CLDN9O95484 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2□□□□□ -2.09
CLDN9O95484 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms