Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNU1-100P-201ENST00000365255 165 ntBASIC2.6□□□□□ -1.99
SIX3O95343 Y_RNA.508-201ENST00000384502 114 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RNA5SP210-201ENST00000391034 120 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RPS4XP8-201ENST00000402039 771 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RNU6-248P-201ENST00000410720 107 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RPL21P90-201ENST00000415692 466 ntBASIC2.6□□□□□ -1.99
SIX3O95343 MTND3P17-201ENST00000416968 344 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC016831.2-201ENST00000417179 352 ntBASIC2.6□□□□□ -1.99
SIX3O95343 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.6□□□□□ -1.99
SIX3O95343 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.6□□□□□ -1.99
SIX3O95343 AC087499.2-201ENST00000432861 149 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.6□□□□□ -1.99
SIX3O95343 RPL7P12-201ENST00000446719 750 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RNU7-182P-201ENST00000459009 62 ntBASIC2.6□□□□□ -1.99
SIX3O95343 HMGB1P30-201ENST00000492455 606 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC022493.1-201ENST00000492984 337 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.6□□□□□ -1.99
SIX3O95343 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.6□□□□□ -1.99
SIX3O95343 AC008716.1-201ENST00000511084 513 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC010493.1-201ENST00000513479 292 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.6□□□□□ -1.99
SIX3O95343 Y_RNA.688-201ENST00000516565 95 ntBASIC2.6□□□□□ -1.99
SIX3O95343 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.6□□□□□ -1.99
SIX3O95343 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.6□□□□□ -1.99
SIX3O95343 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.6□□□□□ -1.99
SIX3O95343 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.6□□□□□ -1.99
SIX3O95343 AC025678.1-201ENST00000567861 338 ntBASIC2.6□□□□□ -1.99
SIX3O95343 MIR3913-1-201ENST00000577744 102 ntBASIC2.6□□□□□ -1.99
SIX3O95343 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SIX3O95343 AL670379.10-201ENST00000604330 253 ntBASIC2.6□□□□□ -1.99
SIX3O95343 ATP1B3P1-201ENST00000605365 821 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AL670379.9-201ENST00000605428 253 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC087752.4-201ENST00000605911 462 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC109347.2-201ENST00000610220 349 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AL359198.2-201ENST00000611836 194 ntBASIC2.6□□□□□ -1.99
SIX3O95343 AC093648.1-201ENST00000623546 606 ntBASIC2.6□□□□□ -1.99
SIX3O95343 Z75746.1-201ENST00000440243 2080 ntBASIC2.6□□□□□ -1.99
SIX3O95343 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SIX3O95343 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SIX3O95343 RNU6-108P-201ENST00000365558 107 ntBASIC2.59□□□□□ -1.99
SIX3O95343 MIR1-2-201ENST00000384961 85 ntBASIC2.59□□□□□ -1.99
SIX3O95343 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AL356057.3-201ENST00000402607 340 ntBASIC2.59□□□□□ -1.99
SIX3O95343 U3.37-201ENST00000408528 213 ntBASIC2.59□□□□□ -1.99
SIX3O95343 RNA5SP21-201ENST00000410917 96 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.59□□□□□ -1.99
SIX3O95343 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.59□□□□□ -1.99
SIX3O95343 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SIX3O95343 AL358934.1-201ENST00000432346 324 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.59□□□□□ -1.99
SIX3O95343 USP9YP29-201ENST00000445112 563 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 MTCYBP1-201ENST00000454315 1119 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC006026.2-201ENST00000457376 180 ntBASIC2.59□□□□□ -1.99
SIX3O95343 RPL31P3-201ENST00000458430 332 ntBASIC2.59□□□□□ -1.99
SIX3O95343 snoU13.15-201ENST00000459407 104 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC112771.1-201ENST00000463581 102 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC006512.1-201ENST00000468816 291 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC011005.2-201ENST00000487324 359 ntBASIC2.59□□□□□ -1.99
SIX3O95343 MTAPP1-201ENST00000489154 819 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AC108210.2-201ENST00000503681 201 ntBASIC2.59□□□□□ -1.99
SIX3O95343 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.59□□□□□ -1.99
SIX3O95343 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.59□□□□□ -1.99
SIX3O95343 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.59□□□□□ -1.99
SIX3O95343 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 AL391840.1-201ENST00000571144 367 ntBASIC2.59□□□□□ -1.99
SIX3O95343 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 AC105245.1-201ENST00000581934 244 ntBASIC2.59□□□□□ -1.99
SIX3O95343 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.59□□□□□ -1.99
SIX3O95343 AC008536.2-201ENST00000607284 349 ntBASIC2.59□□□□□ -1.99
SIX3O95343 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
SIX3O95343 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
SIX3O95343 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.59□□□□□ -2
SIX3O95343 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.58□□□□□ -2
SIX3O95343 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
SIX3O95343 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
SIX3O95343 SNORD3E-201ENST00000362899 217 ntBASIC2.58□□□□□ -2
SIX3O95343 Y_RNA.164-201ENST00000363709 102 ntBASIC2.58□□□□□ -2
SIX3O95343 SNORD115-7-201ENST00000365306 82 ntBASIC2.58□□□□□ -2
SIX3O95343 MIR592-201ENST00000384959 97 ntBASIC2.58□□□□□ -2
SIX3O95343 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.58□□□□□ -2
SIX3O95343 FTH1P15-201ENST00000406984 280 ntBASIC2.58□□□□□ -2
SIX3O95343 MIR1287-201ENST00000408492 90 ntBASIC2.58□□□□□ -2
SIX3O95343 RNA5SP184-201ENST00000411071 108 ntBASIC2.58□□□□□ -2
SIX3O95343 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 PGBD4P6-201ENST00000421501 610 ntBASIC2.58□□□□□ -2
SIX3O95343 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.58□□□□□ -2
SIX3O95343 MYL8P-204ENST00000431574 518 ntBASIC2.58□□□□□ -2
SIX3O95343 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.58□□□□□ -2
SIX3O95343 AC004383.1-201ENST00000438135 289 ntBASIC2.58□□□□□ -2
SIX3O95343 HIGD1AP2-201ENST00000446367 280 ntBASIC2.58□□□□□ -2
SIX3O95343 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.58□□□□□ -2
SIX3O95343 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.58□□□□□ -2
SIX3O95343 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.58□□□□□ -2
SIX3O95343 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.58□□□□□ -2
SIX3O95343 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.58□□□□□ -2
SIX3O95343 MRPL42P6-201ENST00000486397 371 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms