Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.1□□□□□ -2.23
SDCBPO00560 AP003033.1-201ENST00000527244 415 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AC087894.1-201ENST00000538359 518 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 DNAJC19P9-201ENST00000555084 351 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AC026271.5-201ENST00000577873 130 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.1□□□□□ -2.23
SDCBPO00560 CLIC4P2-201ENST00000601934 717 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AC107952.2-201ENST00000606048 486 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.1□□□□□ -2.23
SDCBPO00560 AL133445.2-201ENST00000611191 527 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AL359314.1-201ENST00000616913 261 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 MIR7843-201ENST00000622274 79 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 AP000776.1-201ENST00000530032 1663 ntBASIC1.1□□□□□ -2.23
SDCBPO00560 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
SDCBPO00560 RNU4-51P-201ENST00000364206 140 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
SDCBPO00560 RNA5SP213-201ENST00000391031 106 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 MIR1262-201ENST00000408276 93 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 SNORA11.2-201ENST00000408318 127 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 MIR1284-201ENST00000408337 120 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.09□□□□□ -2.23
SDCBPO00560 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.09□□□□□ -2.23
SDCBPO00560 snoU13.23-201ENST00000458863 104 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 RNA5SP57-201ENST00000459463 123 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC006512.1-201ENST00000468816 291 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.09□□□□□ -2.23
SDCBPO00560 MTCYBP18-201ENST00000501056 747 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 RNU6-572P-201ENST00000516724 80 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 RNU6-667P-201ENST00000517186 102 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC090821.2-201ENST00000523552 176 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.09□□□□□ -2.23
SDCBPO00560 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.09□□□□□ -2.23
SDCBPO00560 AC008269.2-201ENST00000561915 1105 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.09□□□□□ -2.23
SDCBPO00560 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.09□□□□□ -2.23
SDCBPO00560 AL391813.2-201ENST00000609113 322 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC124016.2-201ENST00000610058 665 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AL512598.1-201ENST00000610158 273 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.09□□□□□ -2.23
SDCBPO00560 AC005858.4-201ENST00000623191 700 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.09□□□□□ -2.23
SDCBPO00560 PCMTD1P7-201ENST00000634506 357 ntBASIC1.09□□□□□ -2.23
SDCBPO00560 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
SDCBPO00560 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.09□□□□□ -2.24
SDCBPO00560 DDX43P2-201ENST00000604753 1354 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 RNU6-621P-201ENST00000364752 109 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 U8.10-201ENST00000384260 133 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AC119751.3-201ENST00000399720 670 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC118469.1-201ENST00000442943 488 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 KATNBL1P6-201ENST00000453433 915 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SDCBPO00560 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 RNU1-123P-201ENST00000458950 160 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.08□□□□□ -2.24
SDCBPO00560 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC113347.3-201ENST00000509113 148 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SDCBPO00560 AC135279.1-201ENST00000543493 504 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 SNRPGP17-201ENST00000603780 214 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AL358072.1-201ENST00000604156 575 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AC025754.2-201ENST00000606491 432 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.08□□□□□ -2.24
SDCBPO00560 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.08□□□□□ -2.24
SDCBPO00560 AC123767.1-202ENST00000620407 817 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 AC091812.1-201ENST00000432235 1948 ntBASIC1.08□□□□□ -2.24
SDCBPO00560 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 RNU6-701P-201ENST00000384059 107 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 RNU1-57P-201ENST00000384491 166 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 MIR597-201ENST00000384968 97 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
SDCBPO00560 FTH1P15-201ENST00000406984 280 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.07□□□□□ -2.24
SDCBPO00560 RNU2-41P-201ENST00000410991 178 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL359704.1-201ENST00000411586 781 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.07□□□□□ -2.24
SDCBPO00560 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.07□□□□□ -2.24
SDCBPO00560 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.07□□□□□ -2.24
SDCBPO00560 EIF4EP2-201ENST00000422816 654 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.07□□□□□ -2.24
SDCBPO00560 SDAD1P3-201ENST00000427380 333 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 USP9YP11-201ENST00000427537 717 ntBASIC1.07□□□□□ -2.24
SDCBPO00560 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms