Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL590705.4-201ENST00000532209 134 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC025627.2-201ENST00000576220 160 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 MIR7154-201ENST00000620673 73 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC006065.5-201ENST00000623427 349 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC090617.7-201ENST00000623952 126 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AL592182.3-201ENST00000642132 3304 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.352-201ENST00000365439 102 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 MIR10A-201ENST00000385043 110 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 MIR708-201ENST00000390708 88 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPL21P75-201ENST00000396599 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPL21P28-201ENST00000401418 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 MORN2-203ENST00000409131 544 ntTSL 5 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RNU2-20P-201ENST00000410425 191 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.623-201ENST00000411128 95 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AL590556.1-201ENST00000423231 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 FABP5P15-201ENST00000453566 214 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RNU7-87P-201ENST00000459343 62 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPL21P11-201ENST00000461458 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPL21P39-201ENST00000463605 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPS29P27-201ENST00000463711 170 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC132942.1-201ENST00000486753 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC093591.1-201ENST00000491435 481 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RPL21P16-201ENST00000495531 483 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AK3P2-201ENST00000507976 429 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 PPBPP1-201ENST00000510807 373 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-1338P-201ENST00000516328 91 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC004024.1-201ENST00000549244 247 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 SYF2P1-201ENST00000550658 413 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 MTND6P33-201ENST00000571794 183 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC053481.4-201ENST00000583164 216 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 SRGNP1-201ENST00000603392 451 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AP000787.2-201ENST00000604432 568 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC006077.1-201ENST00000604746 343 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
CHMP3Q9Y3E7 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
CHMP3Q9Y3E7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
CHMP3Q9Y3E7 AC007390.2-201ENST00000606229 3803 ntBASIC5.09□□□□□ -1.6
CHMP3Q9Y3E7 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
CHMP3Q9Y3E7 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.09□□□□□ -1.6
CHMP3Q9Y3E7 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RNY1-201ENST00000364228 113 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.270-201ENST00000364693 104 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.405-201ENST00000383979 100 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.451-201ENST00000384200 100 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.524-201ENST00000384564 100 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.561-201ENST00000384694 100 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 MIR190B-201ENST00000401119 79 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RN7SKP27-201ENST00000410684 333 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AL358472.1-201ENST00000431295 329 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 TBCAP1-201ENST00000436520 327 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AL513124.1-201ENST00000450410 614 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RPS26P28-201ENST00000470806 348 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC025755.1-201ENST00000521306 278 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC093023.1-201ENST00000547375 507 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AL442163.3-201ENST00000554110 156 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 RN7SL703P-201ENST00000578485 302 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 AC008121.1-201ENST00000603244 268 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 MIR6868-201ENST00000611215 58 ntBASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP3Q9Y3E7 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 RNU6-1266P-201ENST00000362794 105 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.143-201ENST00000363520 106 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.439-201ENST00000384119 94 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 RNU6-886P-201ENST00000384319 105 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 SNORA12.2-201ENST00000391040 156 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 SNORD58.1-201ENST00000391313 66 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 PCNPP3-201ENST00000393579 471 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 RN7SL132P-201ENST00000478131 296 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms