Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-685P-201ENST00000517088 95 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AP003392.2-201ENST00000527269 208 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MTCYBP33-201ENST00000575007 1130 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MIR1273C-201ENST00000578669 77 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MIR4775-201ENST00000581168 75 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC090616.3-201ENST00000582184 217 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AL391646.1-201ENST00000603860 190 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC025449.1-201ENST00000603896 529 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC013562.2-201ENST00000611632 603 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AP001486.3-201ENST00000615334 372 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MIR6817-201ENST00000615588 66 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 CKAP2P1-201ENST00000555477 2049 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AL136360.1-201ENST00000503377 1900 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 U3.12-201ENST00000364498 214 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 Z98749.2-208ENST00000381646 500 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 GSTA9P-201ENST00000406231 611 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 EEF1A1P40-201ENST00000412883 573 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC236972.1-201ENST00000433225 199 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AL451074.3-201ENST00000437709 472 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 BRK1P2-201ENST00000442875 223 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 OSTCP8-201ENST00000445117 448 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AL162395.1-201ENST00000457882 422 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 RPL9P33-201ENST00000484311 566 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 DEFB131E-202ENST00000602581 683 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC011939.3-201ENST00000613686 466 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC024940.5-201ENST00000622889 474 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AC011155.2-201ENST00000623202 216 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 AL359740.1-201ENST00000624340 592 ntBASIC2.78□□□□□ -1.96
CPSF3Q9UKF6 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.97
CPSF3Q9UKF6 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC010329.5-201ENST00000623497 2174 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 MTND5P26-201ENST00000426018 1752 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 Y_RNA.33-201ENST00000362591 102 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 VTRNA1-1-201ENST00000363120 99 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU5A-6P-201ENST00000384136 116 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1103P-201ENST00000384150 107 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 MIR27B-201ENST00000385129 97 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP210-201ENST00000391034 120 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AL139095.1-201ENST00000404326 391 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU2-9P-201ENST00000410194 145 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU6-387P-201ENST00000411331 105 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 OR51A5P-201ENST00000415429 942 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 MTCO2P19-201ENST00000427513 598 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AL589823.1-201ENST00000429577 183 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AL445687.1-201ENST00000439946 251 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 MTCO2P7-201ENST00000446518 666 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 DPPA3P1-201ENST00000448050 469 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RPS29P15-201ENST00000458329 171 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 UBE2DNL-203ENST00000474922 222 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 SRIP1-201ENST00000489235 288 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC022493.1-201ENST00000492984 337 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC104806.1-201ENST00000508720 308 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU5F-8P-201ENST00000515941 111 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP320-201ENST00000516263 124 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP148-201ENST00000516527 94 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU6-572P-201ENST00000516724 80 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU6-826P-201ENST00000516827 104 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1183P-201ENST00000517054 60 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 SNORA31.19-201ENST00000517079 126 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC023043.3-201ENST00000593113 385 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AP000787.2-201ENST00000604432 568 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AC064807.4-201ENST00000607201 407 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 198.9 ms